Ictalurus punctatus (channel catfish): 108270370 Help Entry 108270370         CDS       T04658                                  Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism ipu  Ictalurus punctatus (channel catfish) Pathway ipu04115   p53 signaling pathway ipu04145   Phagosome ipu04148   Efferocytosis ipu04350   TGF-beta signaling pathway ipu04510   Focal adhesion ipu04512   ECM-receptor interaction ipu04518   Integrin signaling ipu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ipu00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     108270370   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     108270370    04518 Integrin signaling     108270370  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     108270370    04148 Efferocytosis     108270370   09143 Cell growth and death    04115 p53 signaling pathway     108270370   09144 Cellular community - eukaryotes    04510 Focal adhesion     108270370   09142 Cell motility    04820 Cytoskeleton in muscle cells     108270370  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ipu04131]     108270370   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ipu00536]     108270370 Membrane trafficking [BR:ipu04131]  Endocytosis   Phagocytosis    Opsonins     108270370 Glycosaminoglycan binding proteins [BR:ipu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    108270370 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_ADAMTS TSP1_CFP_C EGF_3 cEGF Laminin_G_3 TSP1_CCN EGF Motif Other DBs NCBI-GeneID:  108270370 NCBI-ProteinID:  XP_017332472 Ensembl:  ENSIPUG00000019167 UniProt:  A0A2D0RPN7 LinkDB All DBs Position 9:9462344..9472142 Genome browser AA seq 1171 aa AA seqDB search MLTALCLLLMLCSSQGSGIAESREDNSVYDLFELAKVHKKHHGVSLVKGPDPYSPAYKIL NPNIIPAIPERVFKDLIYSIQEEKGFLFVANIKQAKNTRGSLFSVERRDGSGSIFELVSN GNADTLDLIYATANGHHEISIEDAQLASGSWMNITLFVQEDRAQLYIGCEEINTRELDVP IHQILTQDVADVSVLRIGKGAVKSRFMGVLQNARFVFRTTLETILRNMGCESSSFIIDVV TLDNPVNGSSPAIRTDYTGHKTKDLQDICGFSCEDLAGMFKELKGLGVVVKQLSNQLHQV TAENARIKTHIQNYSGVCLHNGIRYKDKDEWTVDSCTHCTCQNSATICREISCPLMPCAN ATVPDGECCPRCGTLNDYPDDGWSPWSEWTYCSVTCGRGIQQRGRSCDRINSNCEGTSVQ TRDCHLQECDKRFKQDGGWSHWSPWSSCSVTCGMGVITRIRLCNSPTPQMGGKDCQGEGR QTEPCKMSPCPINGDWGPWSLWDSCSVTCGGGLQSRHRLCNNPVPKYGGKECTGDSKGTR ICNSQDCPIDGCLSNPCFAGAKCTSFPDGSWKCGECPVGYTGDGIHCEDIDECKMVPDAC FMLNGVHRCENTNPGYNCLPCPPRYSGTQPFGRSSDQAMANKQVCAPRNPCEDGSHDCNK KANCIYLGVFSDIMFRCECKPGYAGNGYICGEDTDLDGWPNSDLHCVENATYHCKKDNCP SLPNSGQEDYDKDGIGDACDYDDDNDGIPDDRDNCPFVFNPRQYDQDQDEVGDRCDNCPY NSNPDQIDTDKNGEGDACAIDIDGDGILNENDNCPYVYNVDQRDTDKDGVGDHCDNCPLA HNPDQIDSDSDNVGDKCDSNQDIDDDGHQNSLDNCPYIPNANQVDHDKDGKGDACDHDDD NDGVPDEKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVPDILDVCPENFAISETDFRR FQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGYDEFNAVDFSGTFFINTDRD DDYAGFVFGYQSSSRFYVVMWKQITQTYWSHIPTKAQGYSGLSIKVVNSTTGPGEHLRNA LWHTGDTAGQVRTLWHDPKKIGWKDFTAYRWTLIHRPKTGLIRVIMYEGKKIMADSGNIY DMTYAGGRLGLFVFSQEMVYFSDLKYECRDV NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgttgaccgcgttgtgtttactgctgatgctgtgcagttcacaaggcagcggaatagca gagagccgagaagacaacagcgtgtatgatttatttgaactcgcaaaagtacataaaaaa caccatggggtgagcctagtgaagggacccgacccttacagccctgcttacaaaattctc aaccccaacattatccctgccatccctgagcgtgtcttcaaggatctcatatactccatc caagaggagaaaggcttcctattcgtggccaacatcaagcaagccaagaacaccaggggc agcctgttctctgtggagaggagagatggctctggttccatttttgagctcgtctcaaat gggaatgctgatactttagatctgatttatgccacggcaaacgggcaccatgagatctca attgaagatgcacagctggccagtggaagttggatgaacatcaccctgtttgtgcaggag gaccgtgcacagctctatattggttgtgaagagataaacacaagggaactagatgtgcct atccaccagattctgacgcaggatgtggctgatgtctctgtccttaggattggaaaagga gcagtgaaaagcagatttatgggagtgctccagaacgcacgctttgtgtttaggaccact ttggagacaatccttcgtaacatgggatgtgagagctcctcgttcatcattgatgttgtg accctggacaacccagtcaatggctccagtccagctatacgcacagattacactggacac aagaccaaagatctccaggacatctgtggcttctcttgtgaagacttggccggcatgttt aaggagctcaaggggcttggtgtggttgttaagcaactgtcaaatcagctccaccaagtg actgcagaaaatgctcgaataaagacccatattcagaactacagtggggtttgcctgcat aatggcattaggtacaaagacaaggacgagtggacggtggacagctgcacccactgcacc tgccagaactctgccactatttgccgggaaatctcctgccctctcatgccttgtgccaat gccactgtgcctgatggtgaatgctgcccacgttgtggaactctgaatgactatcctgat gatggctggtctccctggtctgagtggacttactgctcagtgacctgtggccgtggcata caacaacgtgggcgctcatgtgatcgcatcaacagcaactgtgagggtacctcggtgcag accagagactgccacctgcaagaatgtgacaaacgcttcaagcaagatggaggctggagc cactggtctccctggtcctcatgttcagtgacctgtggcatgggtgtcatcactcgcatc cgcctctgtaactcacccaccccacaaatgggaggcaaagactgtcaaggagaaggcaga cagacagaaccatgcaagatgtccccttgcccaatcaatggagactgggggccatggtca ctttgggactcttgctctgtcacttgtggtggtggactacagagcagacatcgcctttgt aacaatcctgtgcccaaatatggtggaaaagagtgcacaggtgactccaaaggcacccgc atttgcaactctcaagactgtcccattgatggctgtctttctaacccttgctttgctggt gctaagtgcaccagctttcctgatggttcttggaagtgtggggagtgtccagttgggtat actggagatggaatccattgtgaagacattgatgagtgcaaaatggttcctgatgcatgc ttcatgctcaatggagtccatcgttgtgagaacactaatccgggctataactgcctacca tgtcctccacgctactctggaactcagccttttggtaggagcagtgatcaagctatggca aacaaacaggtctgtgcaccaaggaacccatgtgaagatggcagccatgactgtaacaaa aaggccaattgtatttatttgggcgttttctctgacatcatgtttcgctgcgaatgcaag ccaggctatgctggtaatggttatatatgtggagaggacactgacctggatggctggccc aacagtgatctccactgtgttgagaacgccacctaccactgcaagaaggacaactgccct agccttcccaactctgggcaagaggactatgacaaagatggaattggggatgcttgtgat tatgatgatgacaatgatgggatccctgatgatagggacaactgcccatttgtcttcaac ccaaggcagtatgatcaagaccaagatgaagtcggtgatcgctgtgataactgcccatat aacagcaatccagaccagattgataccgataaaaacggagaaggcgacgcttgtgcaatt gatatcgatggtgatggtattctgaatgaaaacgacaactgcccatacgtgtataatgtt gaccagagagacactgacaaagatggggttggagaccactgtgacaactgtccattggcg cacaaccctgatcagattgactctgattcagataatgtgggtgacaaatgcgacagcaat caggacattgacgacgatggtcaccagaatagtctggacaactgcccatacatccccaat gccaaccaggtcgatcatgacaaggatggcaagggtgatgcatgtgaccacgatgatgac aatgatggtgtgcctgatgagaaagacaactgtagattggcctttaatccagatcagtta gactctgatggtgatggacggggtgatatttgcaaggatgactttgaccaggacaatgtc cctgatattttggatgtttgtccagagaattttgccatcagtgaaacagatttccgtagg ttccagatggttcctctagaccctactggaacttcacaaattgaccctaactgggtggtc cgccaccagggtaaagagcttcttcagacagtcaactgcgaccctggtattgctgttgga tatgacgaatttaatgcagtggatttcagtggaaccttcttcatcaatactgacagagat gacgattatgctggatttgtgttcggctatcagtccagttcccgcttctacgtggtgatg tggaaacagatcacacagacctattggtctcacatacccacaaaagcacagggctactct ggactgtccatcaaagtggtcaattccaccacaggtccaggagaacaccttaggaatgca ttgtggcatactggagacacagcaggacaggtgcgcactttgtggcatgaccccaagaaa attggctggaaggatttcactgcctacagatggaccctcatccatagacccaaaactgga cttatcagagtcatcatgtatgaaggcaagaaaatcatggcagattctggaaatatatat gacatgacatatgctggtggaagacttggcctctttgttttctctcaggagatggtttac ttctcagacctcaaatatgaatgtagagatgtctaa

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