Ictalurus punctatus (channel catfish): 108272679
Help
Entry
108272679 CDS
T04658
Symbol
setdb1a
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1-A isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu00310
Lysine degradation
ipu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108272679 (setdb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108272679 (setdb1a)
Enzymes [BR:
ipu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
108272679 (setdb1a)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
108272679 (setdb1a)
Heterochromatin formation proteins
Other heterochromatin formation proteins
108272679 (setdb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_5
SET
DUF5604
Pre-SET
Tudor_4
MBD
Motif
Other DBs
NCBI-GeneID:
108272679
NCBI-ProteinID:
XP_017336758
Ensembl:
ENSIPUG00000007923
UniProt:
A0A2D0S1X4
LinkDB
All DBs
Position
12:complement(18920399..18938170)
Genome browser
AA seq
1444 aa
AA seq
DB search
MSEEEDQSVNMTEDELQHWVREQVEKDEQLVQRKAQLAQVDDWVKQKEREAKYTQLLYNN
ACESVRECESVMKGLYGMLGLEYRDTDSEEEGGAKPTENIRQITDDFDNGKDEHGADGEG
DDDYVVIDLGAVKEEPKEVELSAGIESSEFSVQMLAQKVKKTEAVDPPTEVNPPSPSTTR
KNKPSDTTLPTIKTLGSPTPITAPSLCDLPAQSLTPTKESSPPVSLGTSIPMSEPVETPP
LTTIPVTSSKSKNDIETPSETSVSTRQNAETSAQCVASTPTSTLPVKAVAASKCSKAASV
NQKPASKNKSSKATITSDTAGKTTAKEKVHDKWASPKPSSKPSSTTTPSNTTVKTAPAEK
AKAIDPKQGDKPETKAPTSSPHSGTTDTPTSDKTSKKTTSTNPPDGKEVSQTSSVTSVNP
VTPVTPVMPARLQKEVKLKVTMSVLGRRRTKTWHQGTILDIKTTESGPRYKILFDGGKGK
SVLSAHHLACVGPPMLKDLFVGCRVVACYREDKQSWLHAAVVVEMPERRNRMRFLVFFDD
GRPAYISLPDLHLVCKPMNNMSEDIEDKVWRAEVEEYLQAYPNPIFVVMRVGQDSKVERD
GKMEQCTVSQVDSSLIQICYKKDQEKEWLYKGSNRLDQIQRIKKRMAEKKKEQAVNKAEW
ISSQKNTKLPTTTATSTTTTTATSTTTTTPTSKTATSTTTPTPTSKTATSTTTPTPTSKT
ATSTTTPTPTSKTTTSTSKTTTAPTTTASTATSSTTVNINIEPLKTSTTPGVSQTVSPVT
TSSSMIKTFAGKPISQPRVVLNRITLPLPLTTVKTTAHTEPTVAGSSNTGNKRPPSEEEE
DSRLQNALLPVVEPGLKYVPHRCCPACLNPVRPMQRDKHRGQNPLLIPLLHGFRRMTARK
RLDGKMSFHVFYRAPCGRSMCEMEEVQAFLFESRCDFLFLDMFCLDPFVLVKRALLPSSM
ASRPLLFLPDISGGKEVVPVPCVNELNTVSPPPLSYTSHRLPAPGVFINTDLDFMVGCDC
TDGCRDRSKCACYQMTIEATSLFTGGPVDVTAGYTHKRLPRYVPTGVYECNALCRCDPWL
CGNRLVQHGLQLRLEVFMTQHKGWGLRCLDDMSKGTFVCVFTGKVVKDEVGNADSAMTGN
EYLANLDYIEGVEKLKQGYESEAYCSDTQEDSNKKTLVTMTTGALKKHGVFQMDSSSGEE
KEETSQQKMERKTPGKRERKASDDLEEYDEEDDDEDEDYKISANDGMGAEWKYLSADCKR
SYTTRRNTKIPDKFQNNIQTSPKISEEQNEVTSSVAKKMRKEGPGGRKLGFAKKSTRAFA
VKSSHRRVKPQAVPEKCVQEKNTALDRKCTRSLFNGEKTCYLIDAKQEGNLARYINHSCS
PNLFVQNVFVDTHDLRFPWVAFFTSKRIRAGTELTWDYSYEVGSVEGKVLLCCCGSAECT
GRLL
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagaggaggaccagagtgtgaacatgacggaggacgagctgcagcactgggtg
cgggagcaggtggagaaggatgagcagctggtgcagaggaaggcgcagttggcgcaggtg
gacgactgggtgaagcagaaagagagggaggcaaagtacacccagctgctgtacaataac
gcctgcgaatcagtccgtgagtgtgagtctgtgatgaagggcttgtatggcatgctggga
ctggagtatcgagacacagactctgaggaagaaggaggagccaaaccgacggaaaacatc
agacagatcacagatgattttgacaacggaaaagatgagcatggtgctgatggtgaaggc
gatgatgactatgttgtcatcgatttgggggcagtgaaggaggaaccgaaggaagttgag
ttgtcagcaggcatagagtcttcagaattttctgtgcagatgttagctcagaaggtgaaa
aaaactgaggctgttgaccctccaaccgaagtcaatccaccatcgccatcaacgaccagg
aaaaacaaaccttctgacaccaccttaccaaccataaagactttaggaagccccacacca
attactgctccatcgctctgtgatttgcctgctcagtcattaacgcctacaaaagaaagc
tctcctcctgtttcattaggcacatctatacccatgagtgagcctgtcgaaacccctcca
ttgaccaccattccagtcacatcttccaaatccaagaacgatatagaaacgcccagtgaa
acatcggtgtctacgaggcagaatgctgaaacttcagcacaatgtgtggcatctacccca
acatccacactcccagtgaaagctgttgctgcgtccaaatgttcaaaagcagcctcagtc
aatcaaaaacctgcctctaagaacaaaagctccaaagcaactataacctcggacaccgcc
ggtaaaaccacagccaaggagaaggttcatgataagtgggccagtcccaaacccagcagc
aaaccttcaagcaccacaacaccatccaataccacagttaaaactgcacctgcagaaaaa
gccaaggctatcgaccctaaacaaggtgacaaaccggagactaaagcccctacctccagc
cctcactctggtaccacagacacaccaacttcagacaagacttccaaaaaaacaacttct
accaatccaccagatggtaaagaagtctcccagacatcatcagtcacttcggtcaatcca
gtcactccggtcacacctgtgatgcctgctcgtcttcagaaagaggtgaagctgaaggtc
accatgagtgttcttggaaggcggaggactaaaacatggcaccagggcacaattttagac
atcaaaacaactgagtctggtcctaggtataagatcctgtttgatggtggtaaagggaag
agtgttttgtctgctcatcacttggcgtgtgttggccctcctatgctgaaggatctcttt
gtggggtgtcgagttgtagcctgctacagagaagacaaacagtcttggctccatgctgca
gtggtagtagagatgccggagcgcaggaaccgtatgaggttcttggtgttttttgatgat
ggccgtccagcctacatctccctgccagacctccatctggtctgtaagccaatgaacaac
atgtctgaagacatagaagacaaggtgtggcgtgccgaggtcgaggaatacctgcaggcg
tatccaaaccccatctttgtggtgatgcgggtggggcaggatagcaaggtggaacgtgat
ggcaaaatggaacaatgtaccgtcagtcaggtggatagcagcttgatccagatttgttac
aagaaagatcaggagaaagagtggctgtataagggctcgaatcgattggaccaaatccaa
aggatcaagaagcgaatggctgaaaagaagaaggaacaggctgtaaataaagcagaatgg
atttcatcgcagaagaacactaaactacccaccaccaccgccacaagtacaaccaccacc
accgccacaagtacaaccaccaccacccccacaagtaaaaccgccacaagtacaaccacc
cccacccccacaagtaaaaccgccacaagtacaaccacccccacccctacaagtaaaact
gccacaagtacaaccacccccacccctacaagtaaaaccaccacctccacaagcaaaacc
accaccgcccccaccaccaccgcctccactgctacctcttcaacaacagtaaatataaat
attgaacccttaaaaacctctactactccaggtgtttctcagactgtttccccagtcaca
acgtcctcaagtatgataaagacatttgccggtaaaccaatatcacagcctagggtcgtc
ctgaacaggattaccttgcctttgccgctgacgactgtgaaaaccaccgcacacactgag
cccacagtggccggttcatctaacacaggaaataaacgccccccttcggaagaggaggag
gacagcagattgcagaatgctcttctcccagttgttgagccaggactgaagtacgtacct
catcgctgctgcccggcttgtctgaatcccgtgaggccgatgcaaagggataaacaccgt
ggccagaatccactacttatcccgctgctccatggctttcgccgcatgaccgcaagaaag
cgtctagatgggaagatgtcttttcacgtcttctatcgtgctccgtgtgggcggagcatg
tgcgagatggaagaggtgcaggccttcctgtttgagtcacgttgtgatttcctcttcctg
gacatgttctgcttggacccgtttgtgctggtgaaaagggctttgctcccgtcttccatg
gccagtcgtcctcttctgttcctgccggacatttcaggaggaaaagaggtggtgcctgtg
ccctgtgttaacgagcttaacactgtctctccgccccctctgagctataccagccatagg
ctgcctgctcctggtgtctttatcaacactgaccttgacttcatggtgggctgtgactgt
actgatggctgtcgagacaggtcaaagtgtgcctgttaccagatgaccatcgaggccacg
tcattgttcaccggtggtcctgtggatgtcaccgccggatacacacacaagcgattgccc
agatacgtgcccactggggtgtacgagtgtaacgctctgtgtcgctgtgatccgtggttg
tgcggtaacagactggttcagcacggccttcagctgcgcctggaggttttcatgactcag
cacaaaggctggggcctgcgctgcctggacgatatgtccaagggtacattcgtgtgtgtt
ttcacaggtaaagtagtcaaggacgaggtggggaatgcagacagtgctatgactggcaac
gagtatttggcaaacctggactatattgaaggtgtggagaaactgaagcagggttatgaa
agtgaagcttactgctctgacacacaggaagacagcaacaagaagactcttgtaacaatg
acgacaggagcgctaaagaaacatggcgtgttccaaatggattcaagcagtggggaagaa
aaggaagaaacaagccaacagaagatggaaagaaagacccccggtaaaagggagagaaaa
gcaagtgatgatttggaagaatacgacgaagaagacgatgatgaagacgaggactataag
atcagcgcgaatgacggtatgggagcggagtggaaatacctgagcgctgactgtaagagg
agctacaccactcggagaaataccaagatcccagacaaatttcagaataacatccagaca
tctcctaaaatctcagaggagcagaatgaggtgacctcttccgtggccaagaagatgaga
aaagagggtccaggagggcgtaagctgggatttgccaagaagtctacacgtgctttcgct
gtcaagtccagtcataggagagtgaagccacaagcagtgcctgagaaatgtgtgcaagag
aagaacacggcacttgacaggaagtgcacgcgaagcctgtttaacggagaaaagacttgc
tatctcatcgacgctaaacaggagggaaacctcgcacgatacattaaccatagctgcagt
cccaatttgttcgtccaaaatgttttcgtcgacacgcatgacctccgcttcccctgggtt
gcgttcttcaccagcaaacgtatcagggctggaacggagctgacctgggattacagctat
gaggtgggcagtgtggaaggaaaggtactactctgctgttgtggttcggccgaatgcacg
ggccggttactctga
DBGET
integrated database retrieval system
