Ictalurus punctatus (channel catfish): 108272900
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Entry
108272900 CDS
T04658
Symbol
cxcr4a
Name
(RefSeq) C-X-C chemokine receptor type 4a
KO
K04189
C-X-C chemokine receptor type 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03250
Viral life cycle - HIV-1
ipu03260
Virion - Human immunodeficiency virus
ipu04020
Calcium signaling pathway
ipu04060
Cytokine-cytokine receptor interaction
ipu04144
Endocytosis
ipu04672
Intestinal immune network for IgA production
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108272900 (cxcr4a)
03260 Virion - Human immunodeficiency virus
108272900 (cxcr4a)
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
108272900 (cxcr4a)
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
108272900 (cxcr4a)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108272900 (cxcr4a)
09142 Cell motility
04810 Regulation of actin cytoskeleton
108272900 (cxcr4a)
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
108272900 (cxcr4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
ipu04030
]
108272900 (cxcr4a)
04050 Cytokine receptors [BR:
ipu04050
]
108272900 (cxcr4a)
04090 CD molecules [BR:
ipu04090
]
108272900 (cxcr4a)
G protein-coupled receptors [BR:
ipu04030
]
Rhodopsin family
Chemokine
CXC Chemokine
108272900 (cxcr4a)
Cytokine receptors [BR:
ipu04050
]
Chemokine receptors
CXC Chemokine
108272900 (cxcr4a)
CD molecules [BR:
ipu04090
]
Proteins
108272900 (cxcr4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srsx
CXCR4_N
Motif
Other DBs
NCBI-GeneID:
108272900
NCBI-ProteinID:
XP_017337223
Ensembl:
ENSIPUG00000021715
UniProt:
W5U7Q6
LinkDB
All DBs
Position
12:14955513..14957663
Genome browser
AA seq
364 aa
AA seq
DB search
MSYYEHIIFGDDLVSDNQTDFGSGDLGADMETPCNREGNQDLQRILLPTVYGVIFTLGLV
GNGLVVAVMGCQRKSRTMTDRYRLHLSVADLLFVLSLPFWAVDAASGWRFGGFMCVLVHM
VYTVNLYGSVLLLAFISLDRYLAVVHATSSQATRRLLSERVVYAGAWLPAALLTAPDLAF
ARAEEVGGVDGTRVVCQRIYPVDSALAWMAAFRAQHVLVGFVLPGLVILVCYCVIIVTLS
RGSKGAQKRRALRTTVALVACFFACWLPYCAGIVVDTLLQLGVVTHSCALESGLETWIYV
TEALAYFHCCLNPILYAFLGVKFKKSARRALTGGRGSSLKILAKKKGGMSSVSTESESSS
FHSS
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgtcttattacgagcacattatatttggggatgacctcgtcagtgataaccagaccgac
tttggttctggagacctcggcgctgatatggagacgccatgcaaccgcgaggggaaccag
gacctgcagaggattttgcttcccacggtgtacggtgtgatcttcacgctggggcttgtg
ggtaacgggctggtggtggcagtgatggggtgccagaggaagtcgcgcaccatgactgac
cgctaccggctgcacctgtccgtagccgatctgctgttcgtgctctcgctgccgttctgg
gcggtggacgcggcgagcggctggcgcttcggcggcttcatgtgcgtgctcgtgcacatg
gtgtacacggtgaacctgtacggcagcgtgctcctgctcgccttcatcagcctggaccgc
tacctggccgttgtgcacgctacgagcagtcaggccacgcgtcgcctgctgtccgagcgc
gtggtgtacgcgggcgcgtggctccccgcggcgctcctcactgcgcctgacttggcgttc
gcgcgcgcagaggaggtcggcggcgtggacgggacgcgcgtcgtgtgccagcgcatctac
ccggttgactcggcgctcgcgtggatggcggcgttccgcgcgcagcacgtgctcgtcggc
ttcgtactgcctggcctcgtgatcctggtctgctactgtgtcatcatcgttacgctgtcg
cgcggctccaaaggggcgcagaagaggcgcgcactgcgcaccaccgtggcactcgtggcg
tgcttcttcgcctgctggttgccctactgcgcgggcatcgtcgtcgacacgctactgcag
ctcggcgtcgtcacgcacagctgcgcgctcgagagcggcctcgagacgtggatctacgtc
accgaggcgctcgcgtacttccactgctgcctcaacccgatcctctacgcctttctcggg
gtcaagtttaagaagtcggcgcggcgcgcgctcaccggcggacgtggatccagtctcaag
atcctcgccaagaagaaaggaggcatgtcctcggtgtccacggagtccgagtcgtccagc
tttcactccagttaa
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