Ictalurus punctatus (channel catfish): 108274697
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Entry
108274697 CDS
T04658
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04010
MAPK signaling pathway
ipu04020
Calcium signaling pathway
ipu04510
Focal adhesion
ipu04540
Gap junction
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108274697
04020 Calcium signaling pathway
108274697
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108274697
04540 Gap junction
108274697
09142 Cell motility
04810 Regulation of actin cytoskeleton
108274697
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ipu01001
]
108274697
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ipu04090
]
108274697
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
108274697
Protein kinases [BR:
ipu01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
108274697
CD molecules [BR:
ipu04090
]
Proteins
108274697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
C2-set_2
Ig_VEGFR-1-like_5th
Adeno_E3_CR1
RIFIN
VEGFR-1-like_Ig-like
Motif
Other DBs
NCBI-GeneID:
108274697
NCBI-ProteinID:
XP_017340451
Ensembl:
ENSIPUG00000009456
UniProt:
A0A2D0SDA8
LinkDB
All DBs
Position
14:8053606..8103176
Genome browser
AA seq
1139 aa
AA seq
DB search
MFPLSFSSFVLRLASIQRGPPGHSRFQGKKQKWTSVAEETGVCVCGHVSGKRPHQSATMQ
GVHVSLFPLTPLITALLILLLCSASSGLELSPSTKEIILTANDSISIICSGWAPVSWRYK
REDFSAPDFRMENRSNTSSVLHLTNVTWKHTGVYMCSEDGSEESREVAVYVPDPDEWFLE
NEYSAITRTSNEGTVPCLVTDPKINVTLHDKDTGSPVMGKYIPTSGFTGILEDKIYKCRG
ERNGEEKWSNVFYVFSILVPEALDTHINASKTVLKQGEPLNVNCTAHGVELVFFSWEFPN
KAKDVEILTDIILATMSMRSFLNISQTTLAHSGEYVCHAQESVGNQRTSLSINITVLERG
FVELSSFLNPNVSALLHENVELRVEVEAYPKPHIRWSKDGAVINGDNVINTRQEQETRYI
STLTLVRIRLEQKGYYTIHVANEDDSKEMIFDLVVKVPPQITEISDHHLPEKKHAVTCMA
EGVPSPRIQWFSCDSVHKCSNKSALWSPLVPDTESINIVTNSTYNENRKIHQVYSQVMFL
HPQQITVRCQARNERGARARDIRLVTSTLFSQVAVLAAVLALVVIAIIFIIILIAVWRKK
PRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATA
YGLTNSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYL
VTEFCRYGDLVDYLHRNKQSFLQNYANKSALTNGSDSHICIDSDVPSGKGYVLFGSESDG
GYMDMRKEDMTEYVAMQELTDSIKYADIQPSPYESPYQQDIYQEQGHRVDLSLVISDSPI
LSYTDLVGFSFQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDNNY
ISKGNTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNDLFYNAL
KRGYRMAKPMHAAEDIYEVMRKCWEEKFEKRPEFSYLVQEMGNMLTEGYKKRYSQVSESF
QKSDHPAVVRSKPRMPSPFPGTLPPSSPSTIFPPSSTPNRCLEADQDMALVPYNGYIIPI
PDPKPEEECQEVSMPTESPSSSVGSEAETASLEAPSAEQECYEQLKELSNTPDAEESFL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgttccctctttctttttcttctttcgttttaagacttgccagtatccaaagaggacct
cccggccactcacgttttcagggaaagaaacaaaagtggacctctgttgctgaggagacc
ggggtatgtgtgtgtggacatgtttcaggaaaaagaccacaccaatcagccactatgcag
ggagtccatgtcagccttttcccactgacacccttaataacagctctcctgatcctcctg
ctgtgctcagctagttctggtctggagctgagccccagcacaaaagagatcatcctgact
gcgaatgactccatctccatcatctgttccggctgggcgcccgtctcctggcgctacaaa
agagaagatttttcagcacctgatttcagaatggagaaccgatccaacacctctagtgtt
ctccacctgacgaatgtgacatggaaacacacaggagtgtacatgtgttctgaggatggc
tctgaggagagcagagaggtggctgtctatgtgcctgacccggacgagtggtttttggag
aatgaatattctgcaatcactaggacaagcaatgaagggacagtcccctgtctggtgaca
gaccccaaaattaacgtgaccctccatgataaagatactggaagcccagtgatgggcaag
tacatacccaccagtggctttacaggaatactggaagacaagatttacaaatgcagagga
gaacgcaacggagaggagaagtggtccaatgtgttctatgtcttcagcatcttagttcct
gaggcgctggacacccacatcaatgcctcgaagacggtgctgaaacaaggcgagccgctc
aacgtcaactgcacggcccacggagtcgagctcgtcttcttctcctgggagtttccgaac
aaagctaaagatgtggaaatcctgacagacataatcttggcgaccatgagcatgcgctcc
ttcctgaacatttcccaaaccactctggcacactctggagagtacgtctgccatgcacaa
gagagcgtgggcaaccaacgtacttctcttagtatcaacatcactgtgctggagagaggg
tttgtcgagctgagctcatttctaaacccgaatgtctcagcattactgcatgagaacgtg
gagctgagggtcgaggtggaggcatatcccaagcctcacatccgctggagcaaagatgga
gccgtgatcaacggagacaacgtcatcaacacgaggcaggaacaagagaccaggtacatc
agcacattaactctagtgagaatccgcctagagcagaaaggatattacactattcatgtt
gccaatgaggacgattccaaagagatgatctttgacctagtggttaaagttcccccacag
ataaccgaaatttccgatcatcacctgccggagaaaaagcacgccgtcacctgtatggca
gagggagtcccatctcccagaatccagtggttcagctgtgacagcgtgcacaagtgcagc
aacaaaagtgctctgtggagccccctagtgccagatacagagagcatcaacattgtgact
aacagcacttataatgagaaccgcaagatccaccaggtgtacagccaggtgatgtttctc
catcctcagcagatcactgtccgctgccaggccaggaacgagagaggagctcgggcaagg
gacatcagacttgtcactagcactctgttctcacaggtggctgttctggctgctgttctg
gcactagtcgtcatagccatcatttttatcatcatcctaatcgccgtgtggaggaagaag
ccgcgttatgagatcagatggaaggtgattgagtctgtgagtcaggatggacatgagtac
atctacgtggaccctattcacctcccctatgacctggcctgggagatgcctcgagacagc
ctggtcctcggtcgcactctgggatcaggagcctttggaagagtggtagaggcaactgca
tatggacttaccaattcccaatcttctactaaagtggctgtgaaaatgctcaaatcgacg
gcacgtaggagcgagactcaggctctgatgtctgagctgaagatcatgagtcacctgggt
ccacacctcaacatcgtcaacctgctgggagcctgcactaaacaaggtcctctgtacctg
gtgacggagttctgtcgatacggagacctggtagactacctgcacaggaacaagcagagc
ttcctgcagaactatgcaaacaagagcgccctcactaatggtagtgacagccacatctgc
attgactctgatgtgccttctggaaaaggctatgtgttatttggctctgagagtgatggt
ggttatatggacatgagaaaagaggacatgactgaatatgtggccatgcaagagctgacg
gacagcatcaaatacgctgatatccagccgtctccgtatgagtcaccatatcagcaggac
atctaccaagaacaaggtcacagagtggacctttcactggtcatcagtgattctcccatt
ctgagctacactgatctggtgggcttcagcttccaggtggccaaaggcatggagtttctg
gcctccaaaaattgtgttcatcgggacctggctgctaggaatgtcttaatatgtgaggga
aaactggtgaaaatttgtgacttcgggttggccagagacatcatgcatgacaacaattac
atctccaaaggcaacacgttcctgcctctgaagtggatggccccagagagcatcttccac
aacctctatacaacactcagtgatgtctggtcttatggtattttgctgtgggagattttc
actctgggaggaaccccatacccagatctccctatgaatgacctcttctataatgctctt
aagagaggttatcggatggccaaacccatgcacgctgcagaggacatttatgaggtgatg
aggaagtgctgggaagagaagtttgagaagaggccggagttctcctatctggtgcaggag
atggggaacatgcttaccgaaggctataaaaagcgatactcccaggtcagcgagagcttt
cagaagagtgatcatccagccgtggtacgcagcaagcccaggatgccgtctccattcccg
ggcacactccctccctcttccccttccaccatttttcctccatcctccacacctaaccgt
tgcctagaggctgatcaagacatggcactagtaccttataacggttacatcatcccaatc
cctgaccccaagcctgaagaagagtgccaggaagtcagtatgccaacagaaagcccctca
agctctgtagggtctgaggcagagacagcatcattggaggctcccagtgcagagcaggag
tgttatgaacaactgaaggaactctccaacactcctgacgcagaggagagcttcctgtaa
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