Ictalurus punctatus (channel catfish): 108274697
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Entry
108274697 CDS
T04658
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04010
MAPK signaling pathway
ipu04020
Calcium signaling pathway
ipu04510
Focal adhesion
ipu04518
Integrin signaling
ipu04519
Cadherin signaling
ipu04540
Gap junction
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108274697
04020 Calcium signaling pathway
108274697
09133 Signaling molecules and interaction
04518 Integrin signaling
108274697
04519 Cadherin signaling
108274697
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108274697
04540 Gap junction
108274697
09142 Cell motility
04810 Regulation of actin cytoskeleton
108274697
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ipu01001
]
108274697
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ipu04090
]
108274697
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
108274697
Protein kinases [BR:
ipu01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
108274697
CD molecules [BR:
ipu04090
]
Proteins
108274697
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
VEGFR1-3_N_Ig-like
ig
Ig_2
Ig_VEGFR-1-like_5th
V-set
C2-set_2
Adeno_E3_CR1
RIFIN
VEGFR-1-like_Ig-like
Motif
Other DBs
NCBI-GeneID:
108274697
NCBI-ProteinID:
XP_017340451
Ensembl:
ENSIPUG00000009456
UniProt:
A0A2D0SDA8
LinkDB
All DBs
Position
14:8053606..8103176
Genome browser
AA seq
1139 aa
AA seq
DB search
MFPLSFSSFVLRLASIQRGPPGHSRFQGKKQKWTSVAEETGVCVCGHVSGKRPHQSATMQ
GVHVSLFPLTPLITALLILLLCSASSGLELSPSTKEIILTANDSISIICSGWAPVSWRYK
REDFSAPDFRMENRSNTSSVLHLTNVTWKHTGVYMCSEDGSEESREVAVYVPDPDEWFLE
NEYSAITRTSNEGTVPCLVTDPKINVTLHDKDTGSPVMGKYIPTSGFTGILEDKIYKCRG
ERNGEEKWSNVFYVFSILVPEALDTHINASKTVLKQGEPLNVNCTAHGVELVFFSWEFPN
KAKDVEILTDIILATMSMRSFLNISQTTLAHSGEYVCHAQESVGNQRTSLSINITVLERG
FVELSSFLNPNVSALLHENVELRVEVEAYPKPHIRWSKDGAVINGDNVINTRQEQETRYI
STLTLVRIRLEQKGYYTIHVANEDDSKEMIFDLVVKVPPQITEISDHHLPEKKHAVTCMA
EGVPSPRIQWFSCDSVHKCSNKSALWSPLVPDTESINIVTNSTYNENRKIHQVYSQVMFL
HPQQITVRCQARNERGARARDIRLVTSTLFSQVAVLAAVLALVVIAIIFIIILIAVWRKK
PRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATA
YGLTNSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYL
VTEFCRYGDLVDYLHRNKQSFLQNYANKSALTNGSDSHICIDSDVPSGKGYVLFGSESDG
GYMDMRKEDMTEYVAMQELTDSIKYADIQPSPYESPYQQDIYQEQGHRVDLSLVISDSPI
LSYTDLVGFSFQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDNNY
ISKGNTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNDLFYNAL
KRGYRMAKPMHAAEDIYEVMRKCWEEKFEKRPEFSYLVQEMGNMLTEGYKKRYSQVSESF
QKSDHPAVVRSKPRMPSPFPGTLPPSSPSTIFPPSSTPNRCLEADQDMALVPYNGYIIPI
PDPKPEEECQEVSMPTESPSSSVGSEAETASLEAPSAEQECYEQLKELSNTPDAEESFL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgttccctctttctttttcttctttcgttttaagacttgccagtatccaaagaggacct
cccggccactcacgttttcagggaaagaaacaaaagtggacctctgttgctgaggagacc
ggggtatgtgtgtgtggacatgtttcaggaaaaagaccacaccaatcagccactatgcag
ggagtccatgtcagccttttcccactgacacccttaataacagctctcctgatcctcctg
ctgtgctcagctagttctggtctggagctgagccccagcacaaaagagatcatcctgact
gcgaatgactccatctccatcatctgttccggctgggcgcccgtctcctggcgctacaaa
agagaagatttttcagcacctgatttcagaatggagaaccgatccaacacctctagtgtt
ctccacctgacgaatgtgacatggaaacacacaggagtgtacatgtgttctgaggatggc
tctgaggagagcagagaggtggctgtctatgtgcctgacccggacgagtggtttttggag
aatgaatattctgcaatcactaggacaagcaatgaagggacagtcccctgtctggtgaca
gaccccaaaattaacgtgaccctccatgataaagatactggaagcccagtgatgggcaag
tacatacccaccagtggctttacaggaatactggaagacaagatttacaaatgcagagga
gaacgcaacggagaggagaagtggtccaatgtgttctatgtcttcagcatcttagttcct
gaggcgctggacacccacatcaatgcctcgaagacggtgctgaaacaaggcgagccgctc
aacgtcaactgcacggcccacggagtcgagctcgtcttcttctcctgggagtttccgaac
aaagctaaagatgtggaaatcctgacagacataatcttggcgaccatgagcatgcgctcc
ttcctgaacatttcccaaaccactctggcacactctggagagtacgtctgccatgcacaa
gagagcgtgggcaaccaacgtacttctcttagtatcaacatcactgtgctggagagaggg
tttgtcgagctgagctcatttctaaacccgaatgtctcagcattactgcatgagaacgtg
gagctgagggtcgaggtggaggcatatcccaagcctcacatccgctggagcaaagatgga
gccgtgatcaacggagacaacgtcatcaacacgaggcaggaacaagagaccaggtacatc
agcacattaactctagtgagaatccgcctagagcagaaaggatattacactattcatgtt
gccaatgaggacgattccaaagagatgatctttgacctagtggttaaagttcccccacag
ataaccgaaatttccgatcatcacctgccggagaaaaagcacgccgtcacctgtatggca
gagggagtcccatctcccagaatccagtggttcagctgtgacagcgtgcacaagtgcagc
aacaaaagtgctctgtggagccccctagtgccagatacagagagcatcaacattgtgact
aacagcacttataatgagaaccgcaagatccaccaggtgtacagccaggtgatgtttctc
catcctcagcagatcactgtccgctgccaggccaggaacgagagaggagctcgggcaagg
gacatcagacttgtcactagcactctgttctcacaggtggctgttctggctgctgttctg
gcactagtcgtcatagccatcatttttatcatcatcctaatcgccgtgtggaggaagaag
ccgcgttatgagatcagatggaaggtgattgagtctgtgagtcaggatggacatgagtac
atctacgtggaccctattcacctcccctatgacctggcctgggagatgcctcgagacagc
ctggtcctcggtcgcactctgggatcaggagcctttggaagagtggtagaggcaactgca
tatggacttaccaattcccaatcttctactaaagtggctgtgaaaatgctcaaatcgacg
gcacgtaggagcgagactcaggctctgatgtctgagctgaagatcatgagtcacctgggt
ccacacctcaacatcgtcaacctgctgggagcctgcactaaacaaggtcctctgtacctg
gtgacggagttctgtcgatacggagacctggtagactacctgcacaggaacaagcagagc
ttcctgcagaactatgcaaacaagagcgccctcactaatggtagtgacagccacatctgc
attgactctgatgtgccttctggaaaaggctatgtgttatttggctctgagagtgatggt
ggttatatggacatgagaaaagaggacatgactgaatatgtggccatgcaagagctgacg
gacagcatcaaatacgctgatatccagccgtctccgtatgagtcaccatatcagcaggac
atctaccaagaacaaggtcacagagtggacctttcactggtcatcagtgattctcccatt
ctgagctacactgatctggtgggcttcagcttccaggtggccaaaggcatggagtttctg
gcctccaaaaattgtgttcatcgggacctggctgctaggaatgtcttaatatgtgaggga
aaactggtgaaaatttgtgacttcgggttggccagagacatcatgcatgacaacaattac
atctccaaaggcaacacgttcctgcctctgaagtggatggccccagagagcatcttccac
aacctctatacaacactcagtgatgtctggtcttatggtattttgctgtgggagattttc
actctgggaggaaccccatacccagatctccctatgaatgacctcttctataatgctctt
aagagaggttatcggatggccaaacccatgcacgctgcagaggacatttatgaggtgatg
aggaagtgctgggaagagaagtttgagaagaggccggagttctcctatctggtgcaggag
atggggaacatgcttaccgaaggctataaaaagcgatactcccaggtcagcgagagcttt
cagaagagtgatcatccagccgtggtacgcagcaagcccaggatgccgtctccattcccg
ggcacactccctccctcttccccttccaccatttttcctccatcctccacacctaaccgt
tgcctagaggctgatcaagacatggcactagtaccttataacggttacatcatcccaatc
cctgaccccaagcctgaagaagagtgccaggaagtcagtatgccaacagaaagcccctca
agctctgtagggtctgaggcagagacagcatcattggaggctcccagtgcagagcaggag
tgttatgaacaactgaaggaactctccaacactcctgacgcagaggagagcttcctgtaa
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integrated database retrieval system
