Ictalurus punctatus (channel catfish): 108276313
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Entry
108276313 CDS
T04658
Name
(RefSeq) nuclear pore membrane glycoprotein 210
KO
K14314
nuclear pore complex protein Nup210
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108276313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108276313
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108276313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_NUP210_8th
Ig_NUP210_13th
Ig_NUP210_3rd
Ig_NUP210_2nd
Ig_NUP210_5th
Ig_NUP210_15th
Ig_NUP210_9th
Ig_NUP210_1st
Ig_NUP210_14th
Ig_NUP210_7th
Ig_NUP210_4th
Ig_NUP210_6th
Ig_NUP210_16th
Big_2
NUP210_Ig
Motif
Other DBs
NCBI-GeneID:
108276313
NCBI-ProteinID:
XP_017343380
Ensembl:
ENSIPUG00000016553
UniProt:
A0A2D0SKZ7
LinkDB
All DBs
Position
15:complement(25679023..25706556)
Genome browser
AA seq
1883 aa
AA seq
DB search
MEELRFRCVFLLLLLTSGCFSHSQAAKLNIPKVLLPLARSTKINFTLEATEGCYRWSSNR
PEVASVESIDVDERQCSQRAVLQARSTQLSRLTSIILAEDVVTGQVLRCDAIVDVISEIQ
IVSTTRELHLEDSPLELMIHALDSEGNTFSTLAGLVFDWSLVKGTETATFPDTYSSLRVL
KFSESTYTPPVHISEMERVGKQGDIILVSGIKTGHAKLKAKIQEPLYTHVGAAEVQLLIL
ENILLSPAYDVYLLARTSIKYKVQKIRQGKITDLSMPCDQYELQLKNSIVAPGGDPYSAV
AELDPGTSTVLALQHGQTNIVLDHKTLGMKGASRLPNSTLYVVEPGYLVFKINPGERWVL
ETGRTYEIFIEVFDKSSNKIYLSDNIRIEPTFPKEFFVVLESSLNGSYHRVKALKNGQTV
IEGMLRAVVDQRGTEHALPVPVRNEQDVEIYNPIILNPSILTFPWQPKEGAYQYTIKASG
GSGNFSWSSSNTAVATVTVKGVMTTVRDIGVSTVYAHDLRNPLHYGEMKVYVIEPVRMEF
APCVVEARVNLALELPLRIFGQLSSEDGEKVTLSDCSHFDLQVQMENHGVFQLQQGRLPP
GQQHCSGVRVQAVSPGYTNLLVSYTHGNVHLNAKITIASYPPLRAVDPVSVALVTLGSSK
DMLFEGGPKPWILEPSKFFRNLTAEDPNSVALTITGPASRNYFTHHVRASCRALGEQVLA
VTVGNRPTLTNPFPAVEPAVVKFVCAPPSRLALIPVYTNAQLDLSCPLLQHNKQVVPVSN
YRNPDLDVAAFDQQGRKFDNFSSLSVTWETSRAALASLESNKPMELYITEEKNTKQRKLH
GRQTVFVHHESGVAAITVSALGYQTSHLEKAAVLPGFEPLTMVSATLDLLLVEDVAVTPQ
SVSIYNHPDVRAELTLREGSGYFFINTSVRGIADVEFQESQGTAEVVPVRPGVLQVMVHD
LCLTFPAPATATVHVSDILEVYVRVVDKVEIGKSVRAYVRVLDDNKKPFLAKYFSHMNLK
LKAASSIVSLQPLSEYSEKDTATFLVKGLVIGQTSISAVVSDKAGRTISSAPQQIEVFPP
FRLLPRKVTLIIGALMQITSEGGPQPQSNILFSLSDSNIASVNSIGLVRGVAVGNMTVTG
VVQAVDTESGKLVAISQDQVEVEVVQLKGIRIRAPITRMKTGTMMPVYVMGLTSSETPFS
FGNALPGLAFHWSVTKRDILDVHTRHSEASVTLSAEHNFAMSVSGRSKGRTGLKVVVRAT
APEAGHLWGNKLELSDEIQIQVYEKLQLLNPEVQAEELLMSPNSLLQLQTNRDGVGSLSY
RVLDCPDKAPLIHVDDNGHLASGSLTGTASLQITAQESFGVNQTIILAVKVVTVSYLRLS
TGPGFYTSNRETLSAVPLGSVLTFTVHFHDSSGEALHSHNSQLTFSTNRDDLVQVGKGVS
NSSLTVRTVNVGLTLLSVWDSEQSGLVDYVALPVHHAIQPADAHNLVPADVVCFSAQLVS
RDGLSGTWSSSSSAILEIHPKTGVAVARDVGTVTVYYEIPGQLRTYREVVVNSVSKTVVT
VPSGSVRNERETKVLLTTRERGTNLIGSCSHAQLESVSSLQPEKSISCRLQFTSDAVDFS
AHDVYHTHTTFDTSAGVYGCVLTLGPMTEQQVKVLGVSMSGVRVEADVEGSRFSGERVGA
ELQVNPGFYSDQTHIILSSQHSTAELSVYGGTGLLQHLQVKSSSPSILVQEKEVSSTYPS
FIRYSVTLLDLHDVTSASLTVSSPGTEQQLVVPITVVHAGETISTPRAGVVGGEGVGILQ
QFVDSYQVMFFTLFALLAGTAVIVIVCHAVFSPKDPSVHPAFIARTPPPPASPVAGHFNH
SLHSSDLRSSPKLRLFSPDYNSR
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atggaagaactcaggttccggtgtgtgttcctgctgctgctcctgacttccggttgcttt
tctcatagccaggctgctaaactcaacatccccaaagtcctgctccctctggccaggagc
accaagatcaacttcactctggaggccactgaaggctgctacagatggtcgtcgaacaga
cccgaggtggcgagtgtcgagtccatagacgtggacgagcgtcagtgttctcagagagcc
gtgcttcaggctcgctccactcagctctcgcgcctcaccagtattattctagccgaggac
gtcgtgacggggcaggtgttacgctgcgacgccatcgtggacgtcatcagcgagattcag
attgtctccaccacacgggagctccacctggaggactcgcccctggagctgatgatccat
gcgctggattcagagggaaacacgttcagtacgctggctggtctggtgttcgactggagc
ctcgtgaagggcacagagacggccacgttccccgatacttacagctcgttacgagttctg
aagttctccgagtcgacctacacgccgccggtgcacatctcggagatggagcgagtcggg
aagcagggagatatcatcctggtgtctgggattaaaactggccacgcgaaactgaaagct
aaaatccaggagcctctgtacacgcatgttggagctgctgaggtgcaactgctgattctg
gagaacatcctcctgagtcccgcctacgacgtctacctgctcgccagaacctccatcaag
tacaaggtgcagaaaatccgtcaaggaaagatcacagacctctccatgccgtgtgaccag
tacgagctccagctgaagaacagcatcgtcgctcctggaggagatccgtattctgcggtg
gccgagctcgatcccggaacctccacggtcctcgcccttcagcacgggcaaaccaacatc
gtcctggatcacaagactctggggatgaagggagcatcccggcttccaaacagcacgctg
tacgtagtggaacccgggtacctcgtgtttaagataaaccccggagaacgctgggttctg
gagaccgggagaacctacgagatcttcattgaagtgttcgacaagtccagcaacaagatt
tatctatcggataacatccggatagaacccaccttccctaaagagttcttcgtggttctg
gagtcgtccctgaacggatcgtaccaccgcgtgaaagcgctgaagaacggacagacggtc
atcgaggggatgctgagggccgtcgtcgatcagagaggaaccgaacacgcacttcctgtc
ccggtgaggaacgaacaggacgtcgaaatctacaaccccatcatcctcaatccctccatc
ctcacgttcccatggcaaccgaaagaaggagcgtatcagtacaccatcaaggcgagtgga
ggaagcgggaacttcagctggtcctcctcaaacacggccgtcgctacggttacggtgaag
ggcgtgatgacgacggtgcgcgacatcggagtgagtacggtgtacgctcacgacctgcgg
aacccgctgcattacggagagatgaaggtgtacgtgatcgagcccgtgaggatggagttc
gcgccgtgtgtggtggaggctcgggtgaatctggctctggagctcccgttgcgtatcttc
ggccagctgagctccgaggacggagagaaggtcacgctgagcgactgctcacactttgat
ttgcaggtccagatggaaaatcacggcgtgttccagctgcagcagggacgtttacccccg
ggtcagcagcactgcagcggtgtgcgtgtccaggccgtatctccgggttacacaaacctg
ctggtcagttacacacacgggaacgttcacctgaacgccaagatcaccatcgcttcatac
ccacctctccgagctgtggatccggtctctgttgctctcgttactctcggctcctctaaa
gacatgctgttcgagggcggcccgaagccgtggatcctcgaaccttccaagttcttcaga
aacctgacagctgaggatccgaacagcgtcgcgctcacgataacgggcccggcgtcacgc
aattacttcactcaccatgtcagagcgtcgtgccgcgccctcggggaacaggtgttggcg
gtgacggtggggaatcggccgacgctcactaatcccttcccggcggtggagccggcggtg
gtgaagtttgtgtgcgctcctccatcacgcctggcgctcatccccgtctacaccaacgcc
cagctcgacctgtcctgccccctgctgcagcacaacaaacaagtggttcctgtgtctaat
taccggaacccggacttggacgtggcggcgtttgaccagcagggcaggaagttcgataac
ttcagctctctgagtgtgacctgggaaacctccagagcagcgctggccagcctcgagtcc
aacaagcccatggagctgtacatcactgaggagaaaaacaccaagcaaaggaaactccac
ggacgtcagacggtgtttgttcatcacgagtctggcgtggcagccatcactgtgagtgcg
ctgggctaccagacgtctcacctggagaaagcggctgttctgcctgggtttgagcctctg
acgatggtctctgctacactggatctcctgttggttgaggatgtggctgtgaccccacag
tctgtctccatttacaatcacccagatgtgcgggccgagctcacgctgcgagaaggctcg
ggttatttcttcatcaatacgagcgttcggggaatcgctgacgtggagtttcaggagtct
cagggaactgctgaggtggttccggtgcgtcccggtgtcctccaggtgatggttcacgac
ctctgcttgacctttcccgctcctgctacagccacggtgcacgtgtcggacatcctggag
gtttacgtgcgtgtggttgataaggtggagatcgggaagtctgtgagagcatacgttcga
gttttggacgacaacaaaaagccgtttcttgccaaatatttctctcatatgaatctgaaa
ctgaaagctgcatcatccatcgtgtctctgcaacctttatcggagtactccgagaaggac
acggcgacgttcctggtcaaaggcctggtgatcggtcagacgagtatctctgctgtcgtg
agcgataaagccgggagaacgatctcatctgcaccacaacaaatcgaagttttcccacct
ttcaggctgctcccgagaaaagtcacgctgattatcggggcgttgatgcagatcacatca
gaaggaggtccacagcctcagtccaatatcctgttctccttaagcgactcgaacatcgcc
tccgttaacagcatcggtctggttcggggcgtcgccgtgggcaacatgaccgttacagga
gtcgtgcaggccgtcgatacggaaagcggcaaactggtggcgatctcgcaggatcaggtg
gaggtggaggtggtgcagctgaaaggcatccgaatcagagcgcccatcactaggatgaag
accggcaccatgatgccagtctatgtgatgggactaacgagcagcgagactccgttctcc
ttcggtaacgctcttccaggactcgcgttccactggagcgtgaccaagagagacatcctg
gacgtccacacgcgccattcagaggcctccgttacgctttctgccgagcacaacttcgcc
atgagcgtgtcgggccgcagtaaaggccgcactggactgaaggtggtggtgcgagcgacg
gctccagaagccgggcacctgtggggcaacaagctggagctgagtgacgagatccagatc
caggtttatgagaaattgcagctgctgaatccagaagtgcaggctgaggagcttttaatg
tccccgaactccttattacaacttcaaaccaaccgggatggagtgggttctctgtcgtat
cgggttctcgactgtcccgataaagctcctctgatccacgtggatgataacggccatctc
gcgtcaggctctctgacgggcacggcgtcgttacagatcaccgctcaggagagcttcggg
gtcaaccagactatcatcctcgctgtgaaggtggtgaccgtgtcgtacctgagactgagc
accggtccgggtttctacacctctaacagagagacgctgtcggccgtcccgctcggctcc
gtcctcaccttcaccgtccacttccacgacagcagcggtgaagctctgcacagccacaac
tcccagctcaccttctccaccaacagggacgacctggtgcaggtgggtaaaggtgtgagt
aacagctctctgacagtgaggacagtaaacgtgggtttgacgctgttgagtgtttgggat
tcggagcaaagcggcctggtggattacgtcgctctgcccgtccatcacgccatccagccg
gccgacgcccacaacctggtgcccgctgacgtggtgtgtttttcagcgcagctcgtcagc
cgtgacgggctctcaggaacatggagctcttcatccagcgccatcctggagatccatccc
aaaacgggcgtggctgtagcgagagacgtgggcacagtgacggtttattacgagattccg
ggacaactgcgcacttacagagaggtcgttgtgaacagcgtctccaagacagtcgtcacg
gttccctcgggctccgtgagaaacgagagagaaaccaaagtgctcctgaccaccagagaa
cgaggaaccaacctgatcggaagctgctcgcacgctcagttggaaagcgtctcgtctctg
cagccggagaagtccatcagttgccgtctgcagttcaccagcgacgccgtcgacttctcc
gctcacgacgtctatcacacacacaccaccttcgacacgagcgcaggtgtgtacggctgc
gtgttaaccctcgggccgatgacggagcagcaggtgaaggttctgggcgtgtccatgagc
ggcgtgagggtggaggcggatgtagagggcagtcgtttttcaggagagcgagtcggcgct
gagctgcaggtgaatcccgggttctactccgatcagacgcacatcatcctgagcagccag
cactccaccgccgagctcagtgtatacggaggcacgggactgctgcagcacctgcaggtg
aagtcgagctctccctccatcctggtccaggagaaggaggtttcctccacctaccccagc
ttcatcagatactccgtgaccctgctagacctgcacgacgtcacgtctgcctctctgacc
gtgtcgagtcccggcaccgaacaacaactcgtcgtccccatcaccgtcgtacacgctgga
gagaccatctccacccccagagcgggtgtggtcggaggagagggagtcgggatcctgcag
cagtttgtggactcgtatcaggtcatgttcttcaccctgttcgccctcctggctggtaca
gccgtcatcgttatcgtgtgtcacgccgttttctctccgaaagacccatccgttcatccc
gccttcatcgccaggactccgccccctccagcgtctccggtcgcgggtcattttaaccac
tcgctccactcgtctgatctgaggagcagtccgaagctgcgtctgttctctccggactat
aactctcgctga
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