Ictalurus punctatus (channel catfish): 108276800
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Entry
108276800 CDS
T04658
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108276800
Cell adhesion molecules [BR:
ipu04515
]
Cadherins
Protocadherins
108276800
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
BppU_N
AGRB_N
Motif
Other DBs
NCBI-GeneID:
108276800
NCBI-ProteinID:
XP_053542772
UniProt:
A0A9F7RTJ3
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Position
16:4128253..4132601
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AA seq
824 aa
AA seq
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MAKRTWFGGWRCLLFWLFLFLLLWINAQGQTRYSVPEELNVGSVVGNIAKDLGLKISELY
DRKLRIASESGKQYFSVNLGKGELVVDERIDRESLCGQNANCLLPVQVIIEDPLQLYRID
VEIQDINDNYPHFQSTERALKIAESTVPGMRFPLESAQDPDVGSNSLKSYTLSKDECFSL
KVKDLGDGRKVPELVLEKSLDREKKALHQLMLTALDGGNPVKSGTSQINITVLDNNDNNP
VFNNAVYKVSINENSSRGTSVLKVDATDLDEGTNGEIQYSFGERTPDAVRSLFLIDPQTG
EIILNGQLDFETTPTYNIEVSATDKGIPEMEGHCNVHIDVLDVNDNPPQIVLTSKPSPVR
EDAPSGTVVALISARDFDSGVNGKVILHTQPEVPFILKSTFSNDYSLVTNGILDREMFPE
YSVEITAFDSGSPSLSSKKTISVQILDVNDNPPKFPDNSFKAYVKENNNPGSIVCSVSAS
DLDVGDNAKISYSIIDSKVQDMPLSSYFYINSDNGSIFSMHSFDYEKMKVFQIQVQAKDH
GSPSLSSNATVHVFIVDQNDNAPAIIYPSALMGSVSHQRMPRSAKAGHLVTKVTAVDADS
GHNAWISYRLAEATDASLFTVTLHTGEVRTKRSVSEQDDSSQRLLIEIKDNGEPLQSTTV
TVDILIEDGFHEPIADFRHKHTEPEKKNSKITLYLIISLASVSLLCLVTFLVLLVKCARS
SRGSSSCCIRRSDCEYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSFGSYLSPMSEF
SDFTLVKPSSTTDFTNTLSVLDASLPDSTWTFECQQVRKKCALR
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaggacgtggtttggaggctggaggtgtcttttattctggttgtttctcttt
cttcttttgtggattaacgcacaaggccagactcgctattccgttcccgaggaattgaac
gtcggctccgttgtcggaaatattgctaaagaccttggcttgaaaatatccgagctttat
gatcgtaaattgcgaatagcctccgaatcaggtaagcagtatttcagtgtgaatttagga
aaaggtgagctggtggttgatgaaaggatcgacagagagagcctttgtggacagaacgca
aactgtctgctgccagttcaagtcataatcgaggatcctctccagctttacagaatagat
gttgaaatacaggatataaacgacaattatcctcattttcagtcaaccgagcgcgcacta
aaaatcgcagagtccaccgtgcctggaatgcgcttccccctggaaagtgcacaagaccca
gatgtaggaagtaattctttaaaatcgtacacgctgagcaaagatgaatgcttcagctta
aaagtcaaggatcttggtgatgggcgtaaagtgcccgagttggttttggagaaatccctt
gaccgtgagaagaaagctttacatcagctgatgcttactgcactggatggtggaaatccg
gtcaaatcaggcacttctcagataaatatcactgtccttgataacaatgacaacaatccg
gtatttaacaatgcggtatataaagtaagcattaatgaaaactccagtcgggggacgtca
gtgttaaaagttgacgctacagatttggacgagggcacgaatggtgaaatacagtactcg
tttggagagcgcacacccgacgcagtgcgctcattgtttctcattgatccacagacgggc
gaaatcattttgaacgggcagctggatttcgaaaccactccgacgtacaatatcgaagtc
agtgccacagataaggggatccctgaaatggaaggccactgcaatgttcatatcgacgtt
ttagacgtgaatgacaacccaccacaaatcgtgctcacgtccaaaccgagcccagtgcgc
gaggacgcaccgagtggcaccgttgtagcgttaataagcgctcgcgactttgactctggc
gttaatgggaaagttattttacacacccaacccgaggttccttttatactgaaatcgact
ttctccaatgattattctttagtgacgaatggaattttagatcgggaaatgttcccggag
tatagcgtagaaatcaccgcgtttgattcaggctctccttcgttgagtagcaaaaaaaca
atttccgttcaaatccttgatgttaatgataatccaccaaaatttcctgataactcgttt
aaggcatacgtcaaagagaacaacaacccaggttcgattgtttgttctgtctcagcttca
gaccttgatgtcggagacaatgccaaaatatcttattctataattgactccaaagtccag
gacatgcccctgtcgtcttatttctacattaactcagacaacgggagcatttttagcatg
cactcgtttgattatgagaagatgaaagtgtttcaaatccaagtccaggcgaaagatcac
ggctctccgtctctgagcagcaacgccacggttcatgtttttatcgtggaccagaacgac
aatgccccagctatcatttacccctccgcactcatgggctccgtgtctcatcagagaatg
ccccgctccgctaaagcaggacacctcgttactaaagtcacagcagtggacgctgactcg
ggccataacgcctggatttcctatcggctagcggaggccacggacgcgtctctgttcact
gtcactttacatacaggagaggtgaggactaagcgctctgtttcagagcaggatgactcc
tctcagagactgctcatagagataaaggacaacggagaaccgctgcagtccaccacagtc
actgtggatatactgatagaggacggctttcatgaaccaatcgcagactttagacacaaa
cacacagaacctgagaagaaaaatagcaaaatcacattatatctcatcatttctcttgcc
tccgtgtcattgttgtgtttggtgacatttttggtcttgttggtaaaatgcgctcgaagc
agtagaggcagctcgagttgctgtatcagacggagcgattgtgaatataaaaaccccaac
agaaacctgcagatccagctcaacactgacggacccattaaatatgtggaggtgctggga
ggagacatgatgtctcagagtcagtccttcggctcgtatctctctccaatgtccgaattc
agtgatttcaccctcgttaagcccagcagcactacagactttacgaatactctgagcgtg
ctcgatgcgtctttaccggacagcacgtggacgtttgagtgtcagcaggtgagaaaaaaa
tgcgctttgcgttaa
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