Ictalurus punctatus (channel catfish): 108277166
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Entry
108277166 CDS
T04658
Symbol
tiam1a
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1 isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04530
Tight junction
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108277166 (tiam1a)
09142 Cell motility
04810 Regulation of actin cytoskeleton
108277166 (tiam1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108277166 (tiam1a)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
108277166 (tiam1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PDZ_2
PH_11
Motif
Other DBs
NCBI-GeneID:
108277166
NCBI-ProteinID:
XP_017345131
Ensembl:
ENSIPUG00000011409
UniProt:
W5UA27
LinkDB
All DBs
Position
16:11600995..11662816
Genome browser
AA seq
1615 aa
AA seq
DB search
MGNIESQNGDHSLYFETQNHLSRKHMSHSLRIANKHSCRSRNISSGKEEHNGSEASTRSS
STPSIPQSLCENGLEPFNETDALSGHVWGDPVGVNLRPISFHDQPGEQSTTPGSEDGGET
VVGDGQDDDGLNETEKSYLQRVNDPLGEGGSFKNKKRSKSADMWREDSLEFSLSDLSQEQ
LTSTEEIVHTTEPKNGKLNGGHEGHCGERTNSLDELCMQKTSTHRGFRNRYKYRRDSKRT
TAGNINNNMLSPEEEGGSGYGAYTLPCRRSHCLSEGRPKQQGALCPSMQGRRAQTSHDIT
AGEGSEYGDSGIDGVTVDAKPQSRRCKAMSASFSVYSAASIRSSSGSSSGGGGDRERRLG
EGQGVYENFRQELEISSRQTCESLEEAGSAVSDERSSGTASSAFLSEALFLETTQGTVRK
AGALAVKNFLVHKKNKKVESATKRKWKRYWVSLKGCTLFLYETDGRSGIDHNSIPKHAVW
AENSIVQAVPEHPKKDFVFCLSNSLGDAFFFQTSGQTELENWITAIHSACATAVARQHHR
EDTVRFLRAEIKKLEQKIDMDEKMKKMGDMQLSAVTDSKKRKTILEQIFLWEQNLEQFHV
DLFRFRCYLSSLQGGELPNPKRLLAFASRPTKLAMGRLGIFSVSSFHALVAARTESGVQR
RTHALSRSSSKRKSRFSSLWGLDTTSKKKSKSRPSISQVFVDREEPVEKSLEKMFGDPTK
ESLDQTGSMRSLPQHAADSDVWVTEYLTPSWVILPNDQPVLAIIQPGEMTLEALESVCKA
HFLDRPKHYLRLKFLIDNQVQFYVPKPEEELWDLLYKEIEICTKTTKVIQFDRKESCAIG
YGFSVVVVDEDGTQQLHITNVKAGGMAFTKGLRAGDEILQLNDKEASVLELSDLNAAFAQ
PSLTVTISTVPQSEPCQRCLLLPRRSDAPHDLYTDIFSQSQEDILDETSGNVLESPDTED
MEEYAISPVEDVVDGSVAELETDSEHKSSEQMTSFCRSLHDMNPAEPVASSSSSPSSSCE
PSPISPVPVPSTQRQLSDADKLRKVISELVDTERTYVKDLHFLIERYLTPLQKENFLSQD
ELDVLFGNLPEMAEFQVEFLKTLEDGTRLVPDLDKLERVDQFKKVLFSLGGSFLYYADRF
KIYSAFCASHTKVPKVLTKAKTDPEFKAFLAKRNPRQQHSSTLESYLIKPIQRVLKYPLL
LRELYCLTDPESEEHYHLNVAINAMNKVASHINEMQKIHEEYGAVFDQLISDQSTDKKEV
ADLSMGDLLLHATVVWINPPSSLMKGKKDPELAAFVFKTAIVFVYKDCSKQKKKIGTSHR
GFVSDERDPFRFRHMIPSDALQVRNATNSDGTAVCEIVHTRSESEGRPERTFQLCCSSSE
SKRDFLKTVHSVLRDKQRRQLLKTESLPLNQQYIPFGGKRFFALKGVRPMNRAVSAPPGN
LGQKRLVRNRFTINTDIVFDNCSSQDSSDFPQRHHPLVYQNNHQADGDTNHWVEEQLDLK
LYDRQTDVKETDILSDDDEYCESVKGSSAEPSLEESFEALIAEVEEEQKEEDKKEEDSAP
NRGSENKLPEKSLGQLRLTPLRKQCAVEGNVAQREVEVIWVRRDDFNSGCGTDIF
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatatagagagccagaatggagatcacagcttatacttcgagactcaaaaccat
ctatcacgcaagcacatgtcacactctctccggatcgccaataagcattcttgccgctct
cgcaacatttcgtctggtaaagaggagcacaatggttcggaagccagcaccagatcaagc
agcactcccagcatccctcagtcgctgtgcgaaaatggcctggagccctttaatgagaca
gatgctctgagtggacatgtctggggtgatccagttggcgtgaacctgcggcccatatct
tttcatgaccagcctggtgaacagagtaccacaccaggctcagaggatggaggggaaaca
gtggtgggtgatggacaggatgatgacggcctcaatgagacagagaagtcatacctgcag
agggtgaatgatccacttggtgaaggtggaagcttcaagaacaagaagcgttccaaatca
gccgacatgtggcgcgaagactcgcttgagttctcgctgtctgacctcagccaggaacag
ttgactagcacagaggagatcgtccataccactgagcctaaaaatggaaagttaaatgga
ggacatgagggtcactgtggcgagaggaccaattctttagatgagctgtgcatgcagaag
acatccacacaccgtggctttaggaatcgctacaagtacaggcgggatagcaaaaggaca
acagccgggaatataaacaataatatgctgtctccagaggaagaaggtggcagtggttat
ggagcatatacactgccctgcagacgctctcactgcctttctgaaggtcgtcctaaacaa
cagggggcactgtgccccagcatgcaaggtcggcgtgcacagacttcgcatgacatcaca
gcaggcgagggcagtgaatatggagacagtggcattgatggtgtgactgttgatgccaag
ccccagtcacgtcgctgcaaggccatgtcggcttctttctccgtgtactctgctgccagc
atcaggagcagcagtggaagcagcagtggaggaggaggggatcgggagcggcggctgggt
gaaggccaaggagtgtatgagaactttcgacaggagcttgagataagctcacggcagaca
tgcgaaagccttgaggaggcggggtcggctgtcagtgatgagagaagcagtggcacagcg
agttctgccttcctgtcagaggcactgtttctcgagacaacgcagggtacagtacgcaag
gcaggtgccttggctgtgaagaacttcttggtgcataagaagaataagaaggttgagtcg
gcaaccaagcgcaagtggaagcgctactgggtatcactgaaaggttgcacacttttcctt
tatgagactgatggacgctcaggaattgatcacaacagcattcccaaacatgcagtgtgg
gctgagaacagcatcgtccaggctgttcctgaacacccaaagaaggactttgttttctgc
ctaagtaactcattaggtgatgcctttttcttccagacgtcaggtcagacagagctggag
aactggatcacggccatccactcagcatgtgccacggcggtggcccggcagcaccaccgc
gaggacactgtgcgcttcctgcgtgctgagataaagaagctggagcagaagattgatatg
gacgagaaaatgaagaagatgggagacatgcagctctcagctgtcactgacagtaaaaag
aggaagaccattctggaacagatcttcctttgggagcagaacctcgagcagtttcatgtg
gatctgtttcgttttcgctgttacttatccagcctgcagggcggcgaacttcccaacccc
aagcgtctactggctttcgcctcgcggcccacaaagctggccatgggccgcctgggcatc
ttctccgtctcttccttccatgccctggttgcagcacggacagagagcggcgttcaaagg
cggacccatgccctgtcccgctcttccagtaaacgcaagagccgtttttcctcactgtgg
ggtctggacactacctcaaagaagaaaagcaaaagcagacccagcattagccaggtgttt
gtggatagagaggaaccagtggagaaaagtctggagaaaatgtttggtgatccaaccaag
gagagcttggatcagacaggttccatgaggagccttcctcagcatgctgccgacagtgac
gtttgggtcactgaatacctcacgccatcttgggtaattttgcccaatgatcagcctgtt
ctggcaattatacagccaggagagatgaccctggaagccctggaatctgtctgcaaggcc
cactttctggatcggcccaagcactatctccggctgaagtttctaatcgacaatcaagtg
caattttatgtccctaagcctgaggaggaactctgggacctgctctacaaagagattgaa
atttgtaccaaaactaccaaagttatccagtttgacagaaaggaatcctgtgctattggt
tatgggttttctgtagttgtggtggatgaggatggcacacagcagctacatattacaaac
gtaaaggcaggaggcatggctttcactaaaggtctgagagctggtgatgagatcctgcag
ctgaacgataaagaggcaagtgtgttggagctgtcggacctgaatgccgcgtttgctcag
ccttctctcacagtcaccatcagtactgtgccccaatctgagccatgccagcgatgtcta
ctgcttccccgccgctcagacgcaccccacgatctctacacagacatcttctcccagagc
caagaggacatcctggatgagacctctggaaatgtgcttgagagcccggacactgaagac
atggaagaatatgccatttcacctgtggaggatgtagtggatggatctgtggctgagctg
gaaactgactctgaacacaagagttcagagcaaatgacttcattctgccgcagccttcat
gatatgaatcctgcggagcctgttgcatcctcttcctcgtccccctcctcctcgtgtgaa
cccagccctatctctccagtgcctgtaccttccacccagcgccagctctcagatgctgac
aaactacgcaaggttataagtgaactggtggacacagagcgcacctatgtgaaggaccta
cattttctgatagaacgatacctgactcctctgcagaaagaaaatttcctgtcacaggat
gagctggacgtgctttttggaaacttgccagagatggctgagtttcaagtggagtttctc
aagactctggaagatggcacaagattggttccagatttagacaagcttgagcgagtggat
cagttcaagaaagtgttgttctctcttggaggctctttcctctactatgcagaccgcttc
aaaatttacagtgctttctgtgccagccatacaaaagtccctaaagtcctcaccaaagct
aaaacagaccctgaatttaaagcatttcttgccaagaggaacccgaggcagcaacactca
tccactctggagtcctacctgatcaagccaatccaaagggtactgaaataccctctgctg
ctcagagagctctactgtctcactgaccctgaaagtgaggagcactaccatctcaatgtt
gctattaatgcaatgaataaagtggccagtcacatcaatgagatgcagaagatccatgag
gagtatggagctgtgtttgaccagctcatcagtgaccagagtacagacaagaaagaggtg
gctgatttatctatgggtgacttattactgcatgccactgtggtttggatcaatcctcca
tcatctctgatgaagggaaagaaagacccagagcttgctgcatttgttttcaagacagcc
atcgtttttgtgtacaaagattgctccaagcagaagaaaaaaattggaacgtctcacaga
ggctttgtttctgatgagagagatccatttagattcaggcacatgattccttcagatgct
ctccaagtccgcaatgctactaattcagatggaacggcagtgtgtgagatagttcacaca
cgatcagaatctgaagggaggccagagaggacttttcaactgtgctgtagctcctctgag
agtaagagggacttcttgaaaacagtgcactctgtcttaagggacaaacagcgtcggcag
ttgttaaagacagagagtctgcctcttaatcagcagtacattccatttggagggaaacgc
ttttttgcactgaaaggagtcaggccaatgaacagagcagtttcagctccacctggaaac
ctcggccaaaaaagacttgtacgcaaccgcttcaccatcaacaccgacattgtctttgac
aactgctccagccaagactcctcagattttcctcagagacatcatcccttggtataccag
aataatcaccaggctgatggagacaccaaccactgggtggaggaacagttggacttgaag
ctgtatgacagacagacggacgtaaaggagacagacatcctcagcgatgatgatgaatac
tgtgagtctgtcaagggctcctcagctgagcccagcctggaagagtcttttgaagctctt
attgctgaagtagaagaggagcagaaggaagaggacaaaaaggaggaagacagtgctccc
aacagaggttcagagaacaagctcccagaaaaatcccttggccaactaaggttgaccccg
ctacgcaagcagtgtgctgtagagggcaatgtggctcagagggaggtagaggttatctgg
gttcgcagagatgattttaacagtggctgtggcactgatatcttctga
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integrated database retrieval system
