Ictalurus punctatus (channel catfish): 108278865
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Entry
108278865 CDS
T04658
Symbol
ldlra
Name
(RefSeq) low density lipoprotein receptor a
KO
K12473
low-density lipoprotein receptor
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03272
Virion - Hepatitis viruses
ipu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
108278865 (ldlra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108278865 (ldlra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108278865 (ldlra)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
108278865 (ldlra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
hEGF
Psg1
Motif
Other DBs
NCBI-GeneID:
108278865
NCBI-ProteinID:
XP_017348017
Ensembl:
ENSIPUG00000006346
UniProt:
W5U5B7
LinkDB
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Position
2:complement(26498275..26511613)
Genome browser
AA seq
867 aa
AA seq
DB search
MEKTLFLFFVIYSASPVQTEVGSCGSRNFQCGNGKCITMRWICDGTDDCGDGTDELPASC
MAKTCKPSEFHCGGRLNQCVPNSWKCDGKADCENGADEAGCSPRQCLNGEFRCSNGQCVS
QAFVCDEDADDCDDGSDEADCQPTTCNPAAFRCNNSVCLPRMWVCDGDSDCTDGSDEWPQ
NCGDQSSSPRKPCSSVDFHCGTGECIPNVWRCDGDTDCPDRSDEKDCTVSTCQPDQFRCG
DGSCIHGIRQCNQVYDCHDMSDELGCVNATHCDAPSRFQCRSGECISMDKVCDKQRDCRD
WSDEPLRECDSNECLYNNGGCSHICNDLKIGYECLCPSGFQLVDKKRCEDIDECASGDAC
SQICVNQVGSYKCECSEGYQVDPTTKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTQVIS
RQKSIVALDMNMANKEIFWSDLSLKKIYRAPMDAALDSSQHSTVIDSGLDAAEGIAVDWI
HGNIYWTDSVRRVVSVATEDGKKRKTLFRKDLTKPRAIVVDPINNFVYWTDWGTPAKIEK
GGLNGVDRSTLVSDNIVWPNGITLDLLNQRLYWVDSKLHTLASIDVQGGGRRTLIIDQGR
LAHPLSVTVFEERVFWTDVSNNAILSADRVTGKDITKVAEHLTSPEDIVLYHNLKQPSAV
NWCKINNGGCEFLCLAAPQVSIFSPKYTCACPDNMMLGIDMRKCVPAVPTTAPSIQPKVS
TTGHPHITPRAIPKTSAPRASKTSAPIITTVVKTQTTEASRAKTSPGNTHYEVTTQTNSH
GAVAAVRKESSTLLALYIALPLVVLCLLGFGGMLLWRNWKLKNTNTIHFENPVYQKTTED
KVHICKNYSSDGYSYPPRQVVSLEDEL
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagactttatttttgttcttcgtgatatattcagcgagcccagttcaaacagag
gttggatcctgtggctccaggaatttccagtgtggcaatgggaagtgtattacaatgaga
tggatatgtgatggtacagatgactgcggtgatggcactgatgagcttcctgcttcctgc
atggcaaagacatgcaaacccagtgagttccactgtgggggacggctaaaccagtgcgtg
ccgaacagctggaaatgtgatggcaaggcagactgtgagaacggtgctgatgaagccggc
tgcagtccaagacagtgtctgaatggtgaattccgctgcagcaatggtcagtgtgtgtct
caggctttcgtctgtgatgaagatgctgatgactgtgacgacggcagtgatgaagcggac
tgtcagcccactacctgcaacccggctgcttttcgctgcaacaactctgtgtgcctgcca
cgcatgtgggtctgtgacggagattccgattgtacagacggttcagacgagtggcctcag
aactgcggcgaccaatcttcatctcccagaaagccctgctccagtgtagacttccactgt
ggcactggggaatgtattccaaatgtctggagatgtgatggagataccgactgcccggat
cgatcagatgagaaagactgcaccgtatccacatgccagccagatcagttccgctgtggt
gatggatcatgtatccacgggatccgccagtgtaaccaggtgtatgactgtcatgatatg
agtgatgaactaggctgtgtcaatgccacccattgtgatgcaccatccaggtttcagtgt
cgcagcggtgaatgcatcagcatggacaaagtatgtgacaagcagcgtgattgtagggat
tggtctgatgagcctctgcgtgagtgtgattctaatgagtgtctgtacaacaacggtggc
tgttctcatatctgtaatgacctaaagattggctatgagtgcttgtgccccagtggattc
caattggtagacaagaaacgctgtgaagatattgatgagtgcgccagtggggatgcatgc
agtcaaatctgtgtgaatcaggtgggcagctacaagtgtgagtgttctgaaggttaccaa
gtagatccaacgaccaaagcatgcaaagctattggaactgttgcctatctattcttcact
aaccgccacgaggtgaggaagatgactctggataagagtgagtacacgcaagtcatctcc
cgtcagaaaagcatagttgccttggacatgaacatggccaacaaggagatcttctggtct
gatctgtccctcaagaaaatttatagagctcccatggatgcagcattagactcatctcaa
catagcactgtgattgactctggcttggatgcagctgaggggattgcagtggactggatc
catggtaatatttactggacagatagtgtacgtcgtgtcgtctctgtagctacagaagat
ggaaagaagcgcaagacgctcttcagaaaagacctgaccaagccaagagctattgtggtt
gacccaattaataattttgtatactggactgactggggtacgcctgctaaaattgagaag
ggtggcctgaatggagttgatcgcagcactttggtgtctgataacattgtctggcctaat
gggataacgcttgatctgttgaaccagcgtctgtactgggtggactctaaactgcatacc
ctcgccagtattgacgtgcagggaggtggccgtcgtacactcattatagaccagggcaga
ctggcacatccattaagtgtcacagtgtttgaggagcgagtattctggactgatgttagc
aacaacgctatcctgagtgctgaccgtgtgacggggaaagacatcacaaaagtggcagaa
caccttacatctccagaggacattgtgctgtatcacaatctgaaacagcccagtgctgtg
aattggtgcaagatcaacaacggtggatgcgagttcctgtgcttggccgcaccacaggtc
agcatcttctcacccaagtacacatgtgcttgtcctgacaacatgatgctgggcatagat
atgaggaaatgtgttcctgctgttccaacaacagcaccatcaatccagcccaaagtttct
accacaggccaccctcatataaccccacgcgctataccaaaaacgtctgccccaagagcc
agcaagacttcagctccaatcatcaccactgtggtgaagacacaaaccacagaagcttcc
agagccaaaacctccccaggcaacactcattatgaagtgaccacacagacaaacagtcat
ggtgctgtcgctgcagtcagaaaagaatcgtcaacattgctggcactttacattgcattg
cccttggtggtgttatgcctcctgggatttggtggcatgttgctgtggaggaactggaag
ctgaaaaacaccaacaccattcattttgaaaatccagtctaccaaaagaccaccgaggat
aaagttcatatctgcaagaactacagctctgatggctactcctaccctccgaggcaagtt
gtcagtcttgaagatgaattatga
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