Ictalurus punctatus (channel catfish): 108279540
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Entry
108279540 CDS
T04658
Name
(RefSeq) interferon regulatory factor 5
KO
K09446
interferon regulatory factor 5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108279540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108279540
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
108279540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
108279540
NCBI-ProteinID:
XP_017349356
Ensembl:
ENSIPUG00000013389
UniProt:
A0A2D0T366
LinkDB
All DBs
Position
19:complement(1762758..1794321)
Genome browser
AA seq
478 aa
AA seq
DB search
MSAQPRRIRLKPWLLAQVNSGKYPGLNWLNKECRLFQIPWRHATRHLPTPEEENTIFKAW
ALETGKYQEGVDEPDPAKWKANLRCALNKSREFMLKYDGTKETPMQPYKIYEVCELSVNG
DECEDDEEELPNVAHLSINPCTVEPPSYPAFPANPVDTFPLPFMPPAFPDHSHIAPTVKQ
EEHLLREAVPNGCGLGTRVIAPSAVPQTIVMPDTMADSPMPEVRPEVESQVHTCLSDLLS
SPHMLPLTDLDIKFQYRGLTVGSMTVSNPQGCRLYSGNLAPTPEQVELFGPITLHQVLFP
GTAEIQNEKQRFYTEHLLDVMDRGLILEIQGQDIYAVRLCQCKVFWSGPGVPEEGQPNPM
ERERKINVFSLNNFLQGLIMYQKGEVPTPPPFEIYFCFGEDWPDRKPKEKKLIIVQVVPV
VARILTEMFSGELSWSTDSIRLQISNPDLKDQTVEQFKELHRLLQNQQAQASWHQNIH
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcccagccaaggagaatccgtctgaagccgtggctgctggctcaggtgaacagt
gggaaataccctggcctcaattggctgaataaggagtgtcgcttatttcagataccctgg
agacatgccacacgccatctgccaaccccagaggaggaaaacactatattcaaggcctgg
gcactggagacagggaagtaccaggagggtgtagatgagcctgatccggccaagtggaag
gccaacctgcgatgcgccctcaacaagagccgtgagtttatgctgaagtatgatggtact
aaggagacaccaatgcaaccatacaagatttatgaggtgtgcgaactgtcagtaaatgga
gatgagtgtgaggatgatgaggaagagctaccaaatgttgcacacctctccatcaaccct
tgtacggttgagcctccaagctacccagcattcccagccaacccagttgatacattccct
ctgccattcatgccacctgcttttcctgatcacagccatatagctcctactgtgaaacag
gaggagcacctactcagggaagctgttccaaatggatgtggtctgggaaccagggtcata
gcaccatctgctgttccccaaactattgtcatgccagacaccatggcggacagtcctatg
ccagaggtgaggcctgaagtagagagccaagtgcacacatgcctctctgacctgctgagc
agtcctcatatgctgcccctaacagacctcgacattaagttccagtatcgcggactgacc
gtgggctctatgactgtgagtaatcctcagggctgtcggctttattctggtaatttggca
ccaacaccggagcaagtggagctatttgggcccatcaccctgcaccaggtgctgttccct
ggaactgccgagatccaaaatgagaagcagcgcttctacactgagcatctgctagatgtg
atggaccgtggcctcatcctggagatccaaggccaggacatctatgctgtgcgtttgtgc
cagtgcaaagtgttctggtctgggccgggagtgcccgaggagggtcagcccaacccgatg
gaaagggagcgcaagatcaatgtgttcagtctcaataactttctgcagggactcatcatg
taccagaagggtgaggtgccgactccaccaccctttgaaatttacttctgctttggggag
gattggcctgacagaaaacccaaagagaagaagctcataattgtccaggtcgtgcctgta
gtggcgaggatcctgacagagatgttctccggtgagctctcgtggtccacagacagcatc
cgcctccagatctccaaccctgatctgaaagaccagaccgttgagcagttcaaggagctc
cacagactgttgcaaaatcaacaggcccaggcctcatggcaccagaacatccactaa
DBGET
integrated database retrieval system
