Ictalurus punctatus (channel catfish): 108280478
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Entry
108280478 CDS
T04658
Symbol
ptprfb
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04514
Cell adhesion molecule (CAM) interaction
ipu04517
IgSF CAM signaling
ipu04520
Adherens junction
ipu04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
108280478 (ptprfb)
04517 IgSF CAM signaling
108280478 (ptprfb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108280478 (ptprfb)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
108280478 (ptprfb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108280478 (ptprfb)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108280478 (ptprfb)
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
108280478 (ptprfb)
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
108280478 (ptprfb)
Cell adhesion molecules [BR:
ipu04515
]
Immunoglobulin superfamily
Type II RPTP family
108280478 (ptprfb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_ROS1
Fn3_VIN3
Ig_2
fn3_2
ig
Ig_VEGFR-1-like_5th
Interfer-bind
Tc-R-P
PTP-SAK
Fn3_PBP1
fn3_SORL1
DSPc
V-set
Y_phosphatase3
C2-set_2
Ig_PDGFR_d4
PTPlike_phytase
PTP-NADK
Fn3_PTPRU
Fn3_ELFN
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
108280478
NCBI-ProteinID:
XP_053529651
Ensembl:
ENSIPUG00000014265
UniProt:
A0A9F7TDZ4
LinkDB
All DBs
Position
20:complement(23576299..23734137)
Genome browser
AA seq
1922 aa
AA seq
DB search
MVPHICPSVPLTPRWLSVLLLLGCTAFPSHADSLPSFIKTPEDQTGISGGVASFVCQAVG
EPKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTATNSAGEINT
SAKLTVLEENQIPAGFPSIDMGPQLKVVERTRIATMLCAASGNPDPEISWFKDFLPVDIN
SSSGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVPPRFSIPP
SDQEVMPGGSTNLTCVAVGAPMPYVKWMTGEVELTKEDEMPVGRNVLELTNIRKSANYTC
VAMSSLGMIEATAQVTVKALPKPPTSLTVTETTATSVTLTWDSGNPEPVSYYMIQYRSKA
SDSSYQEVDGVATTRYSIGGLSPYSEYEFRVMAVNNIGRGPPSDAVETRTSEQAPSSPPL
HVQARMLSSSTMLVQWEPPEEPNGQIRGYRIYYTTDPELQLSAWLKHNTDDSRLTTISGL
TTNITYSLRVLGFTSVGDGPPSDVLQVKTQQGVPAQPSGFEAEAEPDARIMLKWLWPVQE
PITLYELHYWEDGSDNKIRVTFIPAGSYAVEGLKPDTLYKFSLAARSEMGLGVFTKPIEV
RTAQSTPSAPPQDVQVLSLSSTSIKVSWVPPPAASRHGAIVRYTVSYQAVSGEDTERHEV
TDIGADATGVVLEGLGKWTEYVVRVRAHTDVGPGPESAPVRIRTNEDVPGAPPRKLEVEA
VNSTAIRVTWKPPLSGKQHGQIRGYQVIYSRLENGEPRGQPNIMDVALPEAQWNIEDTTE
YEAIISGLISETSYSVTVAAYTTRGDGARSKAKVIKTTGAVPGKPTMHISITVGNTALIQ
WQPPKDMPGELIGYRLRYKRADEETFAVHNFGSTDDHYTATGLFKGATYSFHLSAKNRAG
TGEEFVKNISTQEEVPSGFPLNLSVVGLTTTTTRLTWAPPAPAERNGRITHYIVVYRDIN
SQQNSTNRTADTHMTLHGLRPDTTYDIRIQAFNSKGGGPISPSIQSRTMATSPAFATSFG
VKAVMKTSVLLTWELPENFKSQGLFKILYNQQSVEVQGNMKRKLITGLKPDTNYSFVLMS
RGNSAGGLQQQVSIRTAPDLLKTKPVLFRTDENNGGKITINLPKVATTAPISWYYIVVVP
GSLTSSRRWENPDEMELDELLEVSRVSLQRHRRRRRYTESQRPYITAKLEYLPEMFTLGD
EQNYNGFYNRPVPSNQPYQCFVMAEMKEQHLSNANEKQRVFSSSPYSDPVVVENGSVARS
VESPEMLWVMGPVLAVVLIVSIVIAIILFKRKRASPLPKDEHLSGVKDSLLANSSDPVEM
RRINYQTPGPSTSCCPDTPRMREHPPISVCELADHIERLKANDSLRFSQEYESIDPGQQF
TWENSNMEVNKPKNRYANVIAYDHSRVVLTSVDAVPGSDYINANYIDGYRKQNAYIATQG
PLPETLSDFWRMVWEQRTNTIIMMTRLEEKSRVKCDQYWPVRGTETYGMIQVTMLDTVEL
ATYSVRTFALYKNGSSEKREVRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPPDAGPMV
VHCSAGVGRTGCLIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALL
EAATCGVTEVPARNLYTHIQKLSQPPPGDTVSSMELEFKRLANSRAHTSRFISANLPCNK
FKNRLVNIMPFESTRVCLQPIRGVEGSDYINASCIDGYRQQKAYIATQGPLAETTEDFWR
MLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVT
DARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGR
TGVFITLSIVLERMRYEGVVDLFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHY
AT
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctcatatttgcccctcagtgcccttgacgcctcgctggctttctgtcctgctt
ctgctcggctgcacggcctttccctcccacgccgacagtttgccgagcttcatcaagact
ccggaggaccagacggggatttcaggtggcgtggcgtctttcgtgtgccaggcggtcgga
gaacccaagcctcgcatcacctggatgaagaaagggaagaaagtcagctctcagcgcttt
gaggtgatcgagttcgacgacggctcgggctccgtcctgcggatccagcccctgcgcacg
caccgagacgaggccatttacgagtgtacggccaccaacagcgccggggaaatcaacacc
agcgccaaactcaccgtgctggaagagaatcagattcctgccggtttcccgagcatcgat
atgggtcctcagctcaaagtggtggagcgaacgcggatcgctaccatgctgtgtgccgct
agcggaaaccccgatccggaaatttcctggttcaaggacttccttcccgtcgacatcaac
agcagcagcggacggataaagcagcttcgctcaggagctctgcagatcgagaacagtgaa
gagtcggaccaggggaaatacgaatgtgtggcgacgaacagcgctgggacgcgttactcc
gcccccgccaacctctatgtccgagtacggcgggtgccaccccgtttctccatcccgccc
agcgatcaggaggtgatgccggggggcagcactaatctcacctgcgttgccgtcggagcc
ccgatgccctacgtcaagtggatgactggagaagtcgagctcaccaaagaagatgaaatg
cccgtagggcgcaacgttctggagcttaccaacatccgcaagtcggctaactacacctgc
gtggccatgtcttctctggggatgatcgaagccacggcgcaagttacagtcaaagctctc
cccaaaccccccacgtctctgactgtaacggaaacgacggccaccagcgtcaccctgacg
tgggactctgggaacccggaacccgtctcctattacatgatccaatatcgctccaaagcc
tccgacagcagctaccaggaagtggacggcgttgccacgacgcgctacagcatcggcggg
ttgagcccgtactcggagtacgagttccgcgtcatggcggtgaacaacatcgggcgcggt
ccaccgagcgacgccgtggagacccgcaccagcgaacaggctccttcgtctcctccactg
cacgtgcaggcgcgcatgctgagctctagcaccatgttggtgcagtgggaacctccggag
gaacccaacgggcagatccgtggatatcgcatctattacacgaccgatccggagctgcag
cttagcgcctggctgaagcacaacaccgacgacagccgactgaccacaatctctggatta
accaccaacatcacgtacagtctccgcgtcctgggcttcacgtccgtaggagacggacct
ccgtcggatgtcctgcaggtcaaaacgcagcaaggagtcccggcacagccttccgggttc
gaggccgaagccgaacccgacgccaggattatgctgaagtggctttggcccgtccaagaa
ccgatcactttatacgagctacattactgggaggacggatcagacaataagattcgtgtc
accttcatcccggctgggtcgtacgccgtggaaggcctgaaaccagacactctgtataag
ttctccctcgccgcccgctccgaaatgggcctgggggtcttcactaagcccatcgaagtc
aggaccgctcagtccaccccctcagctccacctcaggacgttcaggtgctcagtctgagc
tccactagcattaaggtgagttgggtgccgcctcctgccgccagcaggcacggcgctatc
gttcgctacaccgtgagctaccaggcggtgagcggcgaggacaccgagcggcacgaggtg
acggatatcggagcggacgccaccggtgttgtactagaggggttggggaagtggacggag
tacgtggtgcgggtgagggctcacaccgacgtggggcccgggcctgagagcgcacctgta
cgcatccgaaccaacgaggatgtgcctggagctcctcctcgtaagttggaggtcgaagct
gtaaactcgacggctatccgtgtgacgtggaagccgccgctctcgggaaagcagcacggt
cagatccgaggatatcaggtgatctattcccggctggagaacggggaaccacgagggcaa
ccgaacatcatggacgtagcgctgcctgaagcccaatggaacattgaggacaccaccgaa
tatgaagccatcatctctggcctgatctcggagacgtcgtactcggttacggtagcggcg
tacaccaccagaggagacggagcacgcagcaaagccaaggtcatcaaaaccacaggagca
gttcctggcaagcccaccatgcacattagcatcacagtgggcaacaccgccctcatccaa
tggcagcccccgaaagacatgccgggcgagctgatcggctaccgcctacgctacaagcgc
gcggacgaggaaacgttcgcagtgcataacttcgggagcacggacgaccactacacggcg
acgggcctcttcaagggcgccacctacagcttccacttgagtgccaagaaccgcgcaggc
accggagaagagttcgtgaagaacatcagcacgcaggaggaagttccaagcgggttcccg
ctgaacttgagcgtggtgggactgaccaccacgaccacccggcttacgtgggcgccgccg
gccccggcggagcggaacggacggatcactcattacatcgtcgtttacagagatatcaac
agccagcagaacagcaccaatcgtacggcggacacgcacatgacgctgcacggcctgcga
cctgacaccacctacgacatccgcatccaggctttcaacagcaaggggggtggacccata
agccccagcatccagagcaggaccatggccacatcaccagctttcgcaacgagttttggc
gtcaaagcggtaatgaagacatccgtccttctgacctgggagcttcccgagaacttcaag
tctcaagggcttttcaagattttgtacaatcagcagagcgtggaggttcagggcaacatg
aagaggaagctaatcacaggcctgaagcccgacactaattactccttcgtgttaatgagt
cgagggaacagcgctggaggactgcagcaacaggtctccatccgaaccgctccggacctc
ctcaaaaccaaacccgtcctcttcagaaccgacgagaacaacggaggaaaaatcaccatc
aaccttcccaaagtggcgacgacagcaccgatcagttggtattacatcgtggtcgtgccg
ggttcgctgacgtcatcacgcaggtgggaaaatccagatgaaatggaacttgatgagctt
ctcgaggtcagcagagtttccctgcagaggcaccggcggcgtcggcgttacactgaaagt
cagagaccgtacatcaccgccaagctggaataccttcccgagatgttcacgctcggagac
gagcaaaactacaatggcttctacaaccgcccggtgcctagcaaccagccgtaccagtgc
ttcgtcatggccgagatgaaggagcagcacctttccaatgccaacgagaagcagcgcgtt
ttctcctccagcccgtactcggacccggtggtggtggagaacggcagcgtggctcgcagc
gtggaatctcccgagatgttgtgggtgatggggccggtcctcgccgtggtgctcatcgtc
agcatcgtcatcgccatcatcctgttcaaaaggaagcgagcatctccgttgcctaaagac
gaacatctgagcggggtgaaggactccctactggcgaactcgtccgatcccgtggaaatg
aggagaatcaactatcagacgccaggtcccagcacctcctgctgccccgacactccaaga
atgagagagcatcctcccatctccgtgtgtgagctggccgaccacatcgagcgcctgaaa
gccaacgacagcctgcgtttctcacaggagtacgagtccatcgatcccggtcagcagttc
acctgggagaactcgaacatggaggtgaacaaaccgaaaaaccgctacgctaacgtcatc
gcctacgatcactcccgagtcgtgctgacctccgtggacgctgttccaggtagcgactac
atcaacgccaactacatcgacggctaccgtaagcagaacgcctacatcgccacgcagggc
cctctgcccgagacgctcagcgatttctggaggatggtgtgggagcagaggaccaacacc
atcatcatgatgaccagactggaggagaaatcacgggtgaagtgtgaccagtactggccg
gtacgtggaacagaaacgtacggaatgatccaggtgaccatgttggatacggtggagctg
gcgacgtacagcgtgcgcacgtttgcactttataagaacggctccagtgagaagagagag
gtgagacagttccagttcatggcgtggccggatcacggcgtgcccgagtaccctacgccc
atcctggccttcctgcgaagggttaaagcatgtaaccctcctgacgccgggcccatggtg
gtgcactgcagtgccggcgtgggtcgcactggctgcctcatcgtgatcgacgccatgctg
gagcgcatgaagcacgagaagacggtggacatttacggccacgtgacgtgcatgcgctct
cagaggaactacatggtgcagacggaggatcaatacatcttcatccacgaggcgctgctg
gaggcggcgacctgcggcgtcaccgaggtcccggcacgaaacctctacacacacatccaa
aaactgagccagcccccgcccggagacaccgtcagctccatggagctcgagtttaagagg
ctggccaactccagagctcacacatcacgcttcatcagcgccaacctgccgtgcaacaag
ttcaagaaccgactggtgaacatcatgccgttcgagtcgacgcgtgtgtgtctgcagcca
atcagaggcgtggaggggtccgactacatcaacgccagctgcatcgatggttacaggcag
cagaaagcgtacatcgccactcagggtcctctggccgagaccacggaggatttctggagg
atgctgtgggagcacaactccaccatcgtggtgatgctgaccaaactccgcgagatggga
cgggagaagtgtcatcagtactggccggccgagcgctccgcccgttatcagtacttcgtg
gtcgaccccatggctgagtacaacatgcctcagtacatcctgcgagagtttaaagtcacc
gacgccagggacggccaatcacggacgatccgccagttccagttcaccgattggccggag
cagggcgtgccgaagacaggcgagggattcatcgatttcattggccaagtgcataaaacc
aaggagcagttcggtcaggacggaccaatcactgtgcactgcagtgcgggagtgggcagg
accggggtgttcatcactctcagcattgttctggagaggatgagatatgaaggagtggtg
gatttgttccagacggttaaaactctgcgcactcagagacctgccatggtgcagaccgag
gaccagtaccagctgtgttaccgagcagctctggagtatctggggagtttcgaccactat
gcaacgtaa
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integrated database retrieval system
