Ictalurus punctatus (channel catfish): 128635186
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Entry
128635186 CDS
T04658
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
128635186
Cell adhesion molecules [BR:
ipu04515
]
Cadherins
Protocadherins
128635186
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
BppU_N
AGRB_N
Motif
Other DBs
NCBI-GeneID:
128635186
NCBI-ProteinID:
XP_053542770
UniProt:
A0A9F7RH43
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Position
16:4109873..4114160
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AA seq
827 aa
AA seq
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MGIMSFFRRKIYCYYFILMWNTIEAHVRYVIPEELRGGSVVGNIAKDLGLDLSEVADRKL
RIASESGKQYFSVAADSGELLVNERIDRESLCGHTVPCLLPLEAVVENPLQLHRVEIDIQ
DINDNTPSFNSDRRILNIPESINPGAKFLLESADDPDVGSNSLQSYTLGSNKYFVLNVKI
QDGIKIPELVLDKPLDREKQATHRLILTAVDGGKPTRSGTCEVNVIVLDINDNAPQFEKS
FYEANIAENELIGNDIIKVSAVDLDEGANGEIEYVFADKTSDALKAVFDINPTTGVINVK
GKLDFEQANLYKFDVMAKDKGNPQMEGHCSVKIMICDINDNAPEIVITSLSSPVPENSPN
NTVIALISTKDSDSGENGKVNLTVASGSPFTLNPSLSNRYTLVTNGALDREKYPEYEIKL
TAVDSGLPALHAEKIVKISISDVNDNPPVFSQKSYTVYTRENTAHGSILCSVLAHDPDLD
QNAKISYSILDSKVQDVSVSSYIYINSDNGSIYTMHSFDYEKMKVFQIQVQAKDHGSPSL
SSNATVHVFIVDQNDNAPAIIYPSALMGTVSHERMPRSAKAGHLVTKVTAVDADSGHNAW
ISYRLAEATDASLFTVTLHTGEVRTKRSVSEQDDSSQRLLIEIKDNGEPLQSTTITVDIL
IEDGFHEPIADFRHKHTEPEKKNSKITLYLIISLASVSLLCLVTFLVLLVKCARSSRGSS
SCCIRRSDCEYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSFGSYLSPMSEFSDFTL
VKPSSTTDFTNTLSVLDASLPDSTWTFECQQVRNYLHLYLSEDIAYI
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgggaattatgtcgtttttcaggaggaagatatattgctattatttcatccttatgtgg
aatacaatagaggcgcatgtccgctatgtcatcccagaggagctaaggggaggatcggtg
gtgggaaatatcgcaaaagaccttggtttggatttatccgaggttgcagatcgtaaattg
cgaatagcctccgagtcgggtaagcagtacttcagtgtggccgcggatagcggcgagctt
ctggtgaatgaaagaattgatagagagagtctttgtgggcacacagtgccgtgtttactg
cctctggaagcagttgtagaaaatcctctgcagttacatcgcgttgagattgacatacaa
gacattaatgacaacactccgagttttaattctgatcggcgtattttaaatattcccgag
tctataaaccctggcgcaaaatttctcctcgagagcgcggacgatcctgatgtcggatca
aattctttgcaatcgtatactctgggaagcaataaatattttgtgttaaatgtaaaaatt
caagatggaataaaaatcccggagttagtactggacaaaccgctcgatcgagaaaagcag
gctactcatagacttatactgacggctgtagacggcggaaaaccgacgagatctggtacg
tgtgaagtcaatgtcatagttcttgatattaacgacaatgcgccgcagtttgagaagtct
ttttatgaagcaaacatcgctgaaaatgaacttattggaaacgacattatcaaggttagc
gctgtagatttagacgagggagcaaatggagaaatcgagtacgtttttgcggacaaaaca
tctgatgcactaaaggcagtttttgatattaacccgactacaggtgtgattaatgtaaaa
gggaaactcgattttgaacaagcaaatttatacaaattcgacgtaatggccaaagataaa
ggaaacccacagatggaagggcactgtagtgtaaaaataatgatctgtgacataaatgac
aacgctccagaaatagtcattacatctctctccagcccagtgcccgaaaattccccgaat
aataccgtcattgctctaattagcactaaagattccgattctggtgaaaatggaaaagtg
aatcttacagtggcatccggttcaccatttacactgaacccttctctatctaatcgttac
acactggttacgaatggtgcactagatcgagagaaatatcctgagtacgagatcaaatta
actgcagttgattcaggtttaccagctctgcatgcagaaaaaatagtaaaaattagtatc
tctgatgtaaacgataatcctcctgttttctctcaaaagtcgtatacagtttacacgaga
gaaaatactgctcacgggtcaattctgtgttccgtattagcacatgatccagatcttgac
caaaatgccaaaatctcctactccattttggactctaaagttcaagatgtttccgtctca
tcgtacatctatattaactcggataatggcagcatttacactatgcactcattcgattat
gagaagatgaaagtgtttcagatccaagtccaagcgaaagatcacggctctccgtctctg
agcagcaacgccacggttcatgtttttattgtggaccagaacgacaacgcccccgctatc
atttacccctccgcactcatgggcactgtgtctcatgagagaatgccccgctccgctaaa
gcaggacacctcgttactaaagtcacagcagtggacgctgactcgggccataacgcctgg
atttcctatcggctagcggaggccacggacgcgtctctgttcactgtcactttacataca
ggagaggtgaggactaagcgctctgtttcagagcaggatgactcctctcagagactgctc
atagagataaaggacaacggagaaccgctgcagtccaccacaatcactgtggatatactg
atagaggacggctttcatgaaccaatcgcagactttagacacaaacacacagaacctgag
aagaaaaatagcaaaatcacattatatctcatcatttctcttgcctccgtgtcattgttg
tgtttggtgacatttttggtcttgttggtaaaatgcgctcgaagcagtagaggcagctcg
agttgctgtatcagacggagcgattgtgaatataaaaaccccaacagaaacctgcagatc
cagctcaacactgacggacccattaaatatgtggaggtgctgggaggagacatgatgtct
cagagtcagtccttcggctcgtatctctctccaatgtccgaattcagtgatttcaccctc
gttaagcccagcagcaccacagactttacaaacactctgagtgtgctcgatgcgtcttta
ccggacagcacgtggacatttgagtgtcagcaggtgagaaattatttacatttatatctg
agcgaagacatagcctacatctga
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