Imperialibacter roseus: RT717_10575
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Entry
RT717_10575 CDS
T09469
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
iro
Imperialibacter roseus
Pathway
iro03030
DNA replication
iro03410
Base excision repair
iro03420
Nucleotide excision repair
iro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
iro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RT717_10575 (ligA)
03410 Base excision repair
RT717_10575 (ligA)
03420 Nucleotide excision repair
RT717_10575 (ligA)
03430 Mismatch repair
RT717_10575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iro03032
]
RT717_10575 (ligA)
03400 DNA repair and recombination proteins [BR:
iro03400
]
RT717_10575 (ligA)
Enzymes [BR:
iro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RT717_10575 (ligA)
DNA replication proteins [BR:
iro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RT717_10575 (ligA)
DNA repair and recombination proteins [BR:
iro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RT717_10575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RT717_10575 (ligA)
MMR (mismatch excision repair)
DNA ligase
RT717_10575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RT717_10575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Auto_anti-p27
HHH
Zn_ribbon_NUD
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
WOK09079
LinkDB
All DBs
Position
complement(2543961..2546015)
Genome browser
AA seq
684 aa
AA seq
DB search
MTKEEAREEIARLSQELNYHNRLYYQEHRTEISDFDFDTLLKKLQELEAAFPEFVDENSP
TLRVGGTVTKDFESVEHKYPMLSLGNTYSEQELRDFDQRVSKALEGAPYEYFCEMKFDGV
ALSLTYENGRLSRAVTRGDGTKGDDVTNNARTIHSIPLRLGKDGDYPSAFEVRGEVFLPR
KMFDKINAEKEDIGEPLLANPRNTASGTLKQQDSAAVAKRRLDCYVYSLLGVESLIQTHE
EAVHLLEKWGFNVSPTYGKCATIDDVLKYIAEWETKRLDLPLDTDGVVIKVNAITQQRLL
GFTAKSPRWAIAYKYKTQSAITELLDITYQVGRTGAVTPVAELEPVLLAGTTVKRASLHN
ANEIARLDLRVGDMVFVEKGGEIIPKVTGVDTAQRKPGSQAVVYLDKCPECGTPLVRTEG
EAVHYCPNTDGCPPQIQGRIEHFIQRNAMNIESMGPETIAGLLSHSLIKDPADIYFLTFE
QLNGLEFSSYSEKKGDTVTRSLREKSARNIIDAIEKSKEQPFENVLFGMGIRYVGRTVAE
KLATHFGGIEEISKASYEQLLEAPEIGERIAQSVIDFFGSGKNVDFINKLSAAGLKLKTE
GGAFVAASDKLAGQTFVISGVFKGFERDDLKSIIKQNGGKVVSSVSAKLNFLVAGDNMGP
AKLEKANELGVKIISEDDFLKMIN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaggaagaagccagagaagaaatagcaaggcttagccaggagctaaactaccac
aaccgcctttactaccaggagcacaggacagaaatctccgattttgattttgacacacta
ttaaaaaagctccaggagcttgaagctgcgtttcctgagtttgtggacgaaaattctccc
acacttcgggttggtggcacagtcaccaaagacttcgaatccgttgagcataagtatccc
atgctttcgctgggaaacacgtactctgagcaggaactccgtgattttgatcagcgggta
tccaaagcattggagggtgcgccttacgagtatttctgcgaaatgaagtttgatggtgtt
gcactcagccttacctacgaaaacggtcgtctttcccgggccgtgaccagaggcgacgga
acaaagggtgatgatgtgaccaacaatgccagaaccatccacagtatcccgctgcgactt
ggcaaagacggagactatccatcagcgtttgaagtgcggggtgaagttttcctgccccgg
aaaatgttcgacaagatcaatgctgaaaaggaagacataggcgagcctcttttggctaat
ccaagaaatactgcatcaggcacactgaaacagcaggattcagcagcagtggccaagcgc
cgcctcgactgttacgtatactcactgcttggcgtggaaagccttatacaaacacacgag
gaagcagtgcacttgctggaaaagtggggattcaacgtatcccctacctatggaaaatgc
gccactatagacgatgtgctgaagtacattgctgagtgggaaacaaaaaggcttgactta
ccgctcgataccgacggcgttgtgattaaagtgaatgcaataactcagcagcggctgctg
ggctttacggccaaaagtccccgctgggccattgcctacaaatacaaaacacaaagtgcg
atcaccgagttgctcgacattacctatcaggtcgggcggaccggcgcagtaaccccggtg
gcagaattagaaccagtgctgctggctggcaccactgtgaagcgggcctcgttacacaat
gccaatgaaattgcccgactcgacctgcgggtcggcgacatggtgtttgttgaaaaggga
ggcgagattattcccaaagtaacgggtgtcgacacggcacaaaggaaaccgggcagccag
gcagtagtttatcttgataagtgcccggaatgtggaacgcctctggtgagaaccgagggt
gaggcagtgcactattgccccaacaccgacggttgcccaccgcagatacaaggccgcatc
gagcatttcattcagcgcaatgccatgaatatcgaaagcatggggcctgaaactattgct
ggcctgctcagtcacagcctgatcaaagacccagcggatatctatttcttgacctttgaa
caacttaatggcctggagttttccagctattcggagaaaaaaggcgatactgttaccaga
agcctgagggagaaatctgcccgcaacattatcgatgctattgaaaagtcgaaagagcag
cctttcgaaaatgttctcttcggcatgggcatcaggtacgtgggaagaacagtggctgaa
aaattggcgacgcattttggaggcatcgaggaaatcagcaaggccagctatgaacagctg
ctggaggcaccggaaattggcgaaagaatcgctcagtcggtgattgacttttttggctca
gggaaaaatgtggacttcattaataaactttcggcagccgggttgaaactcaaaacggaa
ggtggagcgttcgttgctgccagcgacaaactggccggacaaacttttgtcattagcggt
gttttcaaaggatttgaacgtgacgatttgaagagcatcattaaacaaaatggtggcaag
gtcgtatcctcagtctcggccaagctcaactttctggtggctggtgataatatggggcct
gcaaagcttgagaaggccaacgagcttggtgtgaaaattatttcagaagacgacttccta
aaaatgatcaactaa
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integrated database retrieval system
