Ignavigranum ruoffiae: M0R79_05860
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Entry
M0R79_05860 CDS
T08083
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
iru
Ignavigranum ruoffiae
Pathway
iru03030
DNA replication
iru03410
Base excision repair
iru03420
Nucleotide excision repair
iru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
iru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M0R79_05860 (ligA)
03410 Base excision repair
M0R79_05860 (ligA)
03420 Nucleotide excision repair
M0R79_05860 (ligA)
03430 Mismatch repair
M0R79_05860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iru03032
]
M0R79_05860 (ligA)
03400 DNA repair and recombination proteins [BR:
iru03400
]
M0R79_05860 (ligA)
Enzymes [BR:
iru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M0R79_05860 (ligA)
DNA replication proteins [BR:
iru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M0R79_05860 (ligA)
DNA repair and recombination proteins [BR:
iru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M0R79_05860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M0R79_05860 (ligA)
MMR (mismatch excision repair)
DNA ligase
M0R79_05860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M0R79_05860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
UPF0758_N
HHH
BRCT_2
RNA_lig_T4_1
HHH_3
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UPQ85183
LinkDB
All DBs
Position
complement(1379404..1381431)
Genome browser
AA seq
675 aa
AA seq
DB search
MPNSNQQEAQKRIDELIDLLNQYAYQYYVLDEPTVTDYDYDMLYRELESLEKAYPDLIRQ
DSPTQRVGDQLLSGFNKVRHQVPMYSLNNAFSAEEVANFLDRVIQQLGHQVEFMVECKID
GLAISLTYEGGQFVNGATRGDGTVGEDISQNLRTIKSMPLRLQTPINLIVRGEAYMPKAV
FLELNQGREESGQVPLANPRNAAAGALRQIDPKVTAQRKLNLFLYSAVIGEDFQPSSQAE
LFEELEKIGLRTNPFRKLCQTKEEVIEFLQQIEQQRQSLDYEIDGAVIKVNRFEDQDRLG
FTVKAPRWAIAYKFKAEQAETEVLEVEWTVGRTGVVTPTAVMSPVQLAGTKVQRASLHNV
DYIKNLDIRLHDRVILQKAGDIIPEVVSVLVDQRPEDSEPLSIPDHCPVCQSKLVRLDEE
VALRCINLACPAQQLAQISHFTSRDAMNIVGIGEKVVGKLLEQELIHDVADLYDLEVADF
LKLPQTKEKSAENYYQSIQASKNQDLAKLIFGLGIRHVGAKAARLLADHFMSMDALQAAS
AEEISQIEGIGPMISHSIRAYMENEESLNLLKRLEATGLKLSRDKDENQIAQGSSYWQDK
TVVVTGSLSTYTRNEIKDLLSQLGANVTSSVSKQTDLLVAGEKTGSKLTKAQDLGVPVIN
EAELLEKLNEVDANE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgccaaattcaaaccaacaagaggctcagaaacgaatcgatgaacttattgacttgctc
aatcaatatgcttatcaatactatgttttagatgaacctaccgtcaccgattatgattat
gatatgctctaccgtgagttagaaagcttagaaaaggcttatcctgacttgattcgccag
gattctccgactcagcgtgtcggcgatcaattgctatcaggctttaataaagttagacat
caagtaccgatgtatagtttaaataacgctttttcagctgaggaagtggccaatttcttg
gatcgggtgattcaacaattaggtcatcaggttgagtttatggtggaatgtaaaattgat
ggtttggccatctccttaacttatgagggtggtcaatttgttaatggagccacacgggga
gatggaaccgtcggcgaagatatcagccagaacttaagaaccatcaaatcgatgcctctg
cgcttacaaacgccaatcaatttaattgtccgtggcgaggcctatatgcctaaagccgtc
tttctcgagttaaatcagggccgggaagagtctggccaggttccattagccaatccacgg
aatgccgctgctggagctttgcgccaaatcgaccctaaggttacggctcaacgtaaacta
aatcttttcttatacagtgcagtgattggcgaggactttcagcctagttcgcaggcggaa
ctcttcgaagaattggagaaaattggtcttagaaccaatcctttccgcaaattgtgtcag
accaaggaagaagtcattgagtttctacagcaaattgaacaacaacgtcaaagtttggat
tatgaaattgatggtgcggtgatcaaagtgaaccgctttgaggatcaagatcgcttaggc
tttaccgtcaaagccccacgctgggcgattgcttataaatttaaggcagaacaagctgaa
acagaggtccttgaggtcgaatggaccgtaggtcgaacgggcgtggtgacgccaacggcg
gtcatgtctcctgtgcaattggctggtaccaaagttcaacgcgctagcttacataatgtg
gactatattaagaatttagatattcgcttgcatgaccgagtgatactgcagaaagcaggc
gatattattcccgaagtcgtgagtgttttagtggatcaacgtccagaggactctgagcct
ttatccattcctgaccattgtccagtttgtcaaagtaaattggtccggttggatgaagag
gtcgccttacggtgtatcaatctagcttgcccggcacaacaattggctcagatttctcat
ttcacttcccgagatgccatgaatattgtcggtattggcgagaaggtcgttggaaaattg
ttagagcaagaattgattcacgatgtggctgacttatatgatttagaagtagcagatttc
ctcaaactgcctcaaaccaaggagaaatcagccgaaaattattaccaatcaattcaagcc
agtaagaatcaagacttagctaagttaatttttggcttaggaattcgtcatgttggggct
aaagccgctcgattattagccgaccatttcatgagtatggatgccttacaagcggccagt
gccgaagaaattagtcaaattgaaggtattggtccgatgattagccattcaatccgtgcc
tatatggagaatgaagaatcactcaatctactcaagcgactagaagctacaggcttgaag
ctgagccgtgacaaagacgaaaatcaaatcgctcaaggatcgtcatattggcaagacaaa
accgtagtcgtcacaggaagtttatcaacatatacccgaaatgagattaaagatttatta
agtcaactgggagccaatgtgaccagtagtgtatccaaacagaccgaccttttagtcgcc
ggcgagaagactgggagcaaattgacgaaggctcaagatttaggggtgccagtaatcaat
gaagcagaattattagagaaattaaatgaggtagatgcgaatgaataa
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