Ixodes scapularis (black-legged tick): 8040410
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Entry
8040410 CDS
T01131
Name
(RefSeq) TAR DNA-binding protein 43 isoform X2
KO
K23600
TAR DNA-binding protein 43
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8040410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
isc03019
]
8040410
Messenger RNA biogenesis [BR:
isc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
8040410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
8040410
NCBI-ProteinID:
XP_029826020
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MSCFIQVAEDESEEPIELPCEDDGTLLLTTLSAQFPATCGLKYRNPDSGTMRGVRLVDGR
FHPPDNGWGNVVYYCVFPKDACLHNSENKRKSDEQLENSTAKTKRLENRQKCSDLIVLGL
PWKTSEQDLRQYFESFGEVLMAQVKKDPKTGQSKGFGFIRFSSYESQVRALSKRHLIDGR
WCDVKIPNSKDGQASELSRKVFVGRCTEDLTSDDLRDYFSKFGEVTDVFIPKPFRAFAFV
TFVDPDVAQSLCGEDHIIRGTSIHVSNAVPKSEAPPGGGQGGGAPSGGHPGHHPHHPLGP
HPLAGSAGAGRPGGHRGGHLDVGRPPGAQGGGYAAPGPFPGAHHLAAHGGWGQGGAGGHP
GAHPRGAELPNLAALGSSLGMGPLGGQGGQGGGVNPGGVNTTPPTLGMGALNLGAATLPL
SSAVVAALGQAAGFGLFGGSFQGGAGGAEPPGGGPPPPNSGGGPVAGGSGGFLGWMGQGG
GGQGGGSGDGGAGGGGPWPQREGKQGFGMSVSP
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgagctgttttattcaagttgcagaggatgaaagtgaagaacccattgaacttccgtgc
gaagacgatggcaccctgttactgacaacgttatcggcgcagttcccggccacatgcggg
ctcaaatacagaaacccggactccgggacgatgcgtggagtgcgcctcgtcgacggacga
ttccatcctcccgacaacggctggggaaatgttgtgtattactgtgtgttccccaaagac
gcctgcctgcacaactctgagaacaagcgcaagtcggacgagcagctggagaacagcaca
gccaaaacgaagcggctggagaataggcagaagtgctcggacttgattgtgctcggcctg
ccctggaagacctcggagcaagacctgcgccagtacttcgagtcctttggggaggtcctc
atggcacaggtgaagaaggaccccaagacgggccagtcgaaaggcttcggcttcatccgc
ttctcgagctacgagtcgcaagtgcgtgccctctccaagaggcacctgatcgacggccgc
tggtgcgatgtcaagatcccaaactccaaagacggccaggcgtccgagctgagccgcaag
gtgtttgtgggacggtgcacggaggacctgacctccgacgacctgcgggactacttctcc
aagtttggggaggtgacggacgtgttcatccccaagcccttccgggctttcgccttcgtc
accttcgtggacccggacgtggcccagtcgctgtgcggggaggaccacatcatccggggc
acgagcatccacgtcagcaacgccgtgcccaagagcgaggcgccccccgggggcggccag
ggagggggggccccgtcggggggccacccggggcaccatccgcaccacccactggggccc
cacccgctggccggcagcgcgggagccggacgcccggggggacaccgggggggccacctg
gacgtgggacgccccccgggggcccaggggggtggctacgcggccccgggccccttcccc
ggggcgcaccacctggccgcccacgggggctggggccagggtggggcggggggacatccc
ggcgcccacccgaggggcgccgagctgcccaacctggcagccctgggcagcagcctgggc
atggggcccctcgggggtcaggggggccagggcgggggggtgaacccgggcggtgtcaac
acgacgccccccaccctgggcatgggggccctcaacctgggggcggccacgctgcccctc
agctctgcggtggtggcggcgctggggcaggcggccgggttcggcctcttcgggggctcc
ttccaggggggcgcggggggagcagagccccccggggggggacccccaccccccaactcg
ggagggggaccggtggccgggggctcggggggtttcctgggctggatggggcagggggga
ggggggcaggggggcggatctggggacgggggcgcggggggagggggcccctggccccag
cgggagggtaagcagggcttcggcatgtcggtgtctccctga
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