Ichthyobacterium seriolicida: JBKA6_0648
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Entry
JBKA6_0648 CDS
T05228
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03030
DNA replication
ise03410
Base excision repair
ise03420
Nucleotide excision repair
ise03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JBKA6_0648
03410 Base excision repair
JBKA6_0648
03420 Nucleotide excision repair
JBKA6_0648
03430 Mismatch repair
JBKA6_0648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ise03032
]
JBKA6_0648
03400 DNA repair and recombination proteins [BR:
ise03400
]
JBKA6_0648
Enzymes [BR:
ise01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JBKA6_0648
DNA replication proteins [BR:
ise03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JBKA6_0648
DNA repair and recombination proteins [BR:
ise03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JBKA6_0648
NER (nucleotide excision repair)
GGR (global genome repair) factors
JBKA6_0648
MMR (mismatch excision repair)
DNA ligase
JBKA6_0648
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JBKA6_0648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
DUF3909
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BAV94661
UniProt:
A0A1J1E145
LinkDB
All DBs
Position
complement(853965..856034)
Genome browser
AA seq
689 aa
AA seq
DB search
MGIHSWKQSSLPLPHKRKASKYMNITSVEKRIRELSSKLLEHNHYYYDLDSPVISDYEFD
KLLEELQELEKEYPQFQDVNSPTKRIGGSVNKKFKTVVHQRKMYSLSNTYSKEELEQFDI
RVKKVIENDLEYVCELKYDGVAVSILYRGGKLYKAITRGDGVQGDDITDNVKTINSIPLE
LKGDFPEDLEVRGEILMSKDGFKKLNEHRINNDLEPFINARNAASGTLKLHDSKEVAKRP
LICFVYHVLGEGLTFDKHYIGLQKIVEWGFELPDTSKLANNIDEVYDFVKYWDQKRKDLN
FNTDGIVIKVNDYNHQEELGFTAKSPRWAISYKFQSEQAITLLKSIDYQVGRTGAITPVA
NLEPVILADTIVKRASIYNADFISKMDIRQGDTVCIEKGGEIIPKIVSVDTSKRHVDSTP
TIFIKSCPQCDSLLVRGENESQHYCVNSDYCPPQIKGKIEHFISRKAMNIDGLGSETIDL
FFEKNIIRDIADLYALKEEDIINLERIAQKSAQNIINGISKSKEVPFHRVLYALGIRHVG
ETLAKKIAIQYGDIDTLSKTTFEDLIEVDDVGDKIAISILNYFSDLKNCALINSLKEYGI
QMKSELNPIELDTNVLGGKSFVISGVFEKLQRTEIKNMIEQNGGKNTSAISKNTSFIIGG
KNMGTAKLQKANELNIPIISEYDFLEMLS
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
ttgggaatacattcttggaaacaatcttcattacctttgccacataagagaaaagccagt
aaatatatgaatataaccagtgttgaaaaaaggataagagaattatcttcaaagctatta
gagcataaccattactattacgacttagactctccagttatctcagattacgaatttgat
aaattactagaagaacttcaagaattagaaaaagaatatcctcaatttcaagatgtcaac
tcccccacaaagagaataggaggaagtgtaaacaaaaaatttaaaactgtagttcatcaa
agaaagatgtactctttgtcaaatacctactctaaagaagagctagaacaattcgatatt
agagtaaagaaagttatagaaaatgatttggaatatgtatgtgagttaaaatacgatgga
gttgccgtaagtattttatatagaggaggcaaattatacaaagctataaccagaggagat
ggcgttcagggagatgatattacagacaatgtcaaaaccataaattctattcctcttgaa
ttaaaaggtgattttcctgaagatctagaagttagaggtgagatcttaatgagtaaagat
ggatttaaaaaactaaatgagcatcgtataaataatgatttagaaccttttataaatgct
agaaatgccgcttctggcactctaaaactacacgacagtaaggaggtggcaaaaagacct
ttaatatgttttgtataccatgttttaggtgaaggtctgacttttgacaaacactacata
ggattgcaaaaaatcgttgaatggggatttgaattgccagatacttctaaactagcaaat
aatatagatgaggtttatgactttgtgaaatattgggatcaaaagcgcaaagacttgaat
ttcaacacagatggaatagtcataaaggtaaatgattacaaccatcaagaagaattagga
tttacggctaaatctcctcgttgggctatatcttataaatttcaatctgaacaagcaatc
accttgctaaaaagcatagattatcaagtaggcagaacaggagccataacccctgtggct
aacttagaacctgtcatcctagccgatacgattgtaaaaagggcttccatttacaatgca
gattttataagtaaaatggatataagacaaggagatacagtctgtatagaaaaaggagga
gaaataatacctaaaatagtcagtgtggatacttctaagagacacgttgattcgactcct
accatttttataaaaagttgtcctcaatgtgattcccttttggttagaggagagaatgaa
agtcagcattactgtgttaattcagattattgtcctcctcagataaaaggcaagatagaa
cattttataagcagaaaagccatgaatatagatggtttgggaagtgaaactatagatctg
ttttttgaaaaaaatattataagagatatagctgatttatacgccttgaaagaagaagat
ataatcaatctggagaggatagcacaaaaatccgcacagaacatcataaacggaatctca
aaatctaaagaagttccattccatagagttctgtatgctcttggcataagacatgtaggt
gagacattagctaaaaaaatcgctatacaatatggagatatagacactttatcaaaaacg
acctttgaagatttgatagaagtagacgatgtaggagataagatagctattagcattcta
aactatttcagtgatttgaagaattgtgctctgataaatagtttaaaagaatacggcata
caaatgaaaagtgaattgaaccctattgaattagatactaatgtattaggaggtaaaagt
tttgtgatttcaggtgttttcgaaaaacttcaacgaacagaaataaaaaatatgatagaa
caaaatggcggaaaaaacacttcagctatatctaaaaatacttcttttataataggggga
aaaaatatgggaactgcaaaactgcaaaaagccaacgagctaaatattcctataataagt
gaatacgactttttggagatgttaagctaa
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