Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101954382
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Entry
101954382 CDS
T10664
Symbol
Rapgef6
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X2
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04015
Rap1 signaling pathway
iti04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04015 Rap1 signaling pathway
101954382 (Rapgef6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
101954382 (Rapgef6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RA
RasGEF_N
cNMP_binding
PDZ_6
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
101954382
NCBI-ProteinID:
XP_005335851
UniProt:
I3N2P5
LinkDB
All DBs
Position
Unknown
AA seq
1612 aa
AA seq
DB search
MNSPVDPCARQALKKKPPERTPEDLNTIYSYLHGMEILSNLREHQLRLMSARARYEKYSG
NQILFCSETIARCWYILLSGSVLVKDSMVLPPCSFGKQFGGKRGCDCLVLEPSEMIVVEN
SKDNEDSFLQREIPARQSRRRFRKINYRGERQTITDDVDINSYLSLPADLTKMHLTDNPH
PQVTHVSSSQSGCSIASDSGSSSLSDIYQATESEVGDVDLTRLPEGPVDSEDEEEEEEEI
DRTDPLQGRDLVRECLEKEPADKTDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEV
VDQAGAIILEDGQELDSWYVILNGTVEINHPDGKVENLFMGNSFGITPTLDKQYMRGIVR
TKVDDCQFVCIAQQDYWRILNHVEKNTHKVEEEGEIVMVHEHRELDRSGTRKGHIVIKAT
PERLIMHLIEEHSIVDPTYIEDFLLTYRTFLKSPLDVGIKLLEWFKIDSLRDKVTRIVLL
WVNNHFNDFEGDSAMTQFLEEFEKNLEDTKMNGHLRLLNIACAAKAKWRQVVLQKASRES
PLNFSLNGGSEKGFGIFVEGVEPGSKAADAGLKRGDQIMEVNGQNFENITFAKALEILRN
NTHLALTVKTNIFVFKELLSRIEQEKYGVPHIPKIAEKKSNRHSIQDVPGDIEQTSQEKG
NKKVKANTVSGGRNKIRKILDKTRFSILPPKLFSDGGLSQSQDDSIVGTRHCRHSLAIMP
IPGTLSSSSPDLLQPTTSILDFSNPSDIPDQVIRVFKADQQSCYIIISKDTTAKEVVCHA
VHEFGLTGASDTYSLCEVSVTPEGVIKQRRLPDQFSKLADRIQLNGRYYLKNNMETETLC
SDEDAQELVKESQLSMLQLSTIEMATQLSMRDFDLFRNIEPTEYIDDLFKLDSKTGNTHL
KEFEDIVNQETFWVASEILTESNQLKRMKIIKHFIKIALHCRECKNFNSMFAIISGLNLA
PVARLRGTWEKLPSKYEKHLQDLQDLFDPSRNMAKYRNILSSQSMQPPIIPLFPVVKKDM
TFLHEGNDSKVDGLVNFEKLRMIAKEIRQVVRMTSANMDPAMMFRQRKKRWRSLGSLSQG
STNSNMLDVQGGAHKKRTRRSSLLNAKKLYEDAQMARKVKQYLSSLDVETDEEKFQMMSL
QWEPGYGTLTKNLSEKRSAKSSEMSPVPLRSAGQTAKAHLHQSHRVSQVLQVPAVNLHPI
RKKGQARDPTLSSSLPQKVLGPTEEISGKKHTEDTVSVASSLHSSPPASPQGSPRKGYAL
IPSAKSDNLSDSSHSEISSRSSIVSNCSVDSMSTTLQDERCSQTMAIAESTGTLEKTEHS
SGIGDHTQLGPGWMLSKPSLIKGLAVSASMSNEEISHEHVVIEAADSGRGSWTSCSSSSH
DNFQSLPNPKSLDFLNSYRHTHLDDPIAEVEPSDCEPYSCPKGCSRTCGQCKGSLETNQL
RQSWASSSSLSDTYEPNYGTVKRRVLESIPTESSDSLDPKDATDPVYKTVTSSTEKGLIV
YCVTSPKKDDRYREPPPTPPGYMGISLADIKEGPHLHLKPPDYSVAVQRSKMMHNSLSRL
PPASLSSSPVACVPSKIVTQSQRHNLEPSHPKLADVTDADSEADENEQVSAV
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgaactcaccggtggacccctgcgctaggcaagcgctgaagaagaagccgcccgaacgg
acccccgaggatttaaatactatttattcttatcttcatggaatggaaatattgtcaaat
ctcagggagcatcagcttagattaatgtctgcaagagcacgctatgaaaagtacagtggc
aaccagattcttttttgctcagaaactattgccagatgttggtatatcctgctttctgga
tctgtacttgtcaaagactccatggttttgcctccttgcagttttggtaagcagtttgga
ggaaaaagaggatgtgattgtcttgtattagagccttcagaaatgattgtggtagagaat
tctaaagataatgaagatagttttctacaaagagaaattcctgccagacagtctcgacga
aggtttcggaaaataaactacagaggagaacgccaaaccataactgatgatgtggatatt
aacagctatctttctcttccagctgatcttaccaagatgcacctcacagacaaccctcat
ccacaggtgactcatgtgtcttctagtcagtctggttgtagcattgccagtgattctggg
agcagcagtttatctgatatctatcaggctacagagagtgaagtaggagatgtagattta
acacgtcttccagaaggacctgttgattctgaggatgaagaagaagaggaggaagagatt
gatagaacagatccattgcaggggcgagatcttgttcgagaatgtcttgaaaaagaacct
gcagacaaaactgatgatgacattgaacaattacttgaatttatgcaccagcttcctgct
tttgccaacatgaccatgtctgtacggagagagctctgctcagtgatgatttttgaagtg
gtggatcaggctggagctattattcttgaggatgggcaagagcttgattcatggtatgtt
attttaaatggcactgtagaaattaatcatccagatggaaaagttgaaaatctctttatg
ggaaatagttttggaattactcccactcttgataagcagtacatgcgtggtattgtcaga
actaaagtagatgattgtcagtttgtctgcatagcccagcaggattattggagaatttta
aatcatgtggaaaaaaatacccataaagttgaagaagaaggagaaattgttatggtgcat
gagcaccgcgaattagaccggagtggaaccaggaaaggacacatcgtaatcaaggcaaca
cctgagcgactcattatgcatttaatagaagaacattctattgtggacccaacttatata
gaagatttcttattaacttataggacatttcttaaaagtcctttggatgttggaatcaag
cttttggaatggtttaagattgacagcttaagggataaggtgacacggattgtattatta
tgggtaaataatcattttaatgattttgaaggtgattctgctatgactcagtttctggaa
gaatttgaaaaaaatctggaagatacaaaaatgaatggtcatcttaggttattgaatatc
gcctgtgctgcaaaggctaagtggagacaggttgtgctacaaaaggcttctcgagagtca
cctttgaatttcagccttaatggaggaagtgagaagggatttggtatttttgttgaagga
gtagaacctggtagcaaagctgctgatgcaggactgaaacgtggtgatcagataatggaa
gtaaatggacagaattttgagaatattacatttgcaaaggcccttgaaattttgaggaat
aatactcatcttgcactaactgtgaagaccaatatttttgtattcaaagagttgcttagt
aggattgaacaagagaaatatggtgttcctcatattccaaaaattgctgaaaaaaaaagt
aatcggcattcaattcaagatgtcccaggagatattgaacagacatcacaggagaaagga
aataagaaagttaaagcaaatactgtttcaggtggaagaaacaaaatcaggaaaattctg
gataaaacacgatttagtatcttgcctccaaagctatttagtgatggaggcctgagtcaa
tcacaagatgacagcattgtgggaacaaggcattgtagacacagcctagctataatgcct
attcctggaacactctcatccagtagccctgatctcctacagcctactaccagcatattg
gacttttccaatccttcagatattcctgatcaagttataagagttttcaaagcagatcag
caaagttgctacattatcatcagtaaagacactacagctaaagaagtagtttgtcatgct
gttcatgaatttggtttgactggtgcatccgacacatattctctttgtgaagtttctgtt
actccagagggtgtcataaagcagagaagacttcctgaccagttctccaaattagctgat
agaattcaactcaatggaaggtattatttaaaaaataatatggaaacagaaactttatgt
tcagatgaagatgctcaagaactagttaaagaaagccaattatccatgctgcagctcagt
accattgagatggccacccaattatcaatgagggacttcgatttatttcgtaatattgag
cctactgaatatattgatgacctttttaagttggattccaaaacaggaaatactcacttg
aaagagtttgaggacattgtaaaccaagagacattctgggttgcctcagagattttaacc
gaatcaaatcaactcaaacgaatgaaaattattaagcattttattaaaattgcacttcat
tgtcgagaatgtaagaacttcaattccatgtttgcaataataagtggcttgaacttggca
cctgtagcacgactcagaggtacttgggaaaagttaccaagcaaatatgagaaacatctc
caagatctacaagacctttttgatccatctagaaacatggcaaaatatagaaatattctt
agtagtcaaagtatgcagcctccaattatcccactgttccctgttgtcaagaaggatatg
acatttctacatgaaggaaatgactccaaagtagatggtttagtaaacttcgagaagcta
agaatgattgccaaggaaattcgtcaagttgttcgaatgacttctgctaatatggaccca
gctatgatgtttcgacagaggaagaagaggtggcggagtctggggtcactcagtcaaggc
agcacaaattcaaacatgctggatgttcagggaggtgctcacaaaaaaaggacacgccgc
agctctctgctcaatgccaagaagctgtatgaggatgcccaaatggcaaggaaagtaaag
cagtatctttctagtcttgatgtagagacagatgaggagaagttccagatgatgtcattg
cagtgggagcctggatatggtaccttgaccaagaatttaagtgagaaaagatctgccaag
tcatctgaaatgtctccagtgcctctgaggtcagctggccaaacagctaaagcccattta
catcagtcccacagagtaagccaggttcttcaggtaccagctgttaatttgcaccccatc
aggaagaagggacaagcaagagaccctacattgagttcaagtttacctcagaaagtttta
ggaccaaccgaagaaataagtggtaagaaacatacagaagacactgtgtctgtggcatca
tctttacattctagtcctcctgcatctcctcaaggttcccctcgaaaaggttatgcactt
ataccatcagctaaatcagacaacttgtcggactccagccatagcgagatctcttcacgg
tccagcatcgtgagcaattgttctgttgactccatgtctacaactctacaggatgaacgg
tgttctcagaccatggcaatcgctgaatccactgggacattggaaaagacagagcactcc
tcagggataggagaccatactcagcttggtcctgggtggatgctttcaaaaccatcttta
atcaaaggtttagctgtctcagcttctatgagcaatgaagagatttctcatgagcatgtt
gttattgaagcagctgatagtggtcgtggaagttggacttcctgttcaagcagctcccat
gacaattttcagagccttccaaacccaaaaagcttggactttttgaactcctataggcat
actcatttggatgatcccattgctgaagtggaacccagtgactgtgagccctactcctgt
cctaaaggctgctctagaacttgtggccagtgtaagggaagcctagagactaatcagttg
agacaaagttgggcctcctccagttctctctctgatacatatgaaccaaattatgggaca
gttaaacggagagtattggagagcatccccactgagtcatctgacagcttggacccaaag
gatgccactgacccagtttataaaactgtcacttcaagcacagaaaagggcttgattgtg
tactgtgtaacttcacccaagaaggatgataggtatagggagccacctcctactcctcca
ggatatatgggaatttctttagcggacataaaagaaggaccccacctgcacctaaaacct
ccagattatagtgtggcagtgcaaaggtcaaagatgatgcataacagcctttctagactg
ccaccagcttctctcagtagcagccctgtggcgtgtgttccatcgaagattgtaactcag
tctcagaggcataatttggagccatcccatcctaaactagcagatgtgactgatgcagat
agcgaagcagatgaaaatgaacaggtgtcagctgtctga
DBGET
integrated database retrieval system
