Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101954922
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Entry
101954922 CDS
T10664
Symbol
Eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101954922 (Eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
iti03041
]
101954922 (Eftud2)
Spliceosome [BR:
iti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101954922 (Eftud2)
Complex C
U5 SnRNP specific factors
101954922 (Eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFG_C
EFG_IV
GTP_EFTU_D2
EFTUD2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
101954922
NCBI-ProteinID:
XP_040124854
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMRGLYFYGLCLLAHHNLFHSLLPLE
PIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIE
QTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNF
SDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPP
TDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF
GDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTS
LPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEH
TYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLG
ENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGN
EEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILG
TGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEP
LEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLP
SEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPT
ARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTI
KAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAR
EFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQDVVLNYPM
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttatatgatgaatttggaaattatattgggccagaacttgactctgat
gaagatgatgatgaattgggcagagagaccaaagatcttgatgagatgaggggtctgtat
ttttatggtttatgcctacttgcacatcataacctttttcattccctcctccccttagaa
cccattattaagccagtgaaaaccaagaaattcaccctgatggagcagacattacctgtc
acggtgtatgaaatggatttcttggcagatcttatggataactcggagctcatcagaaat
gtgaccctttgtggccatctccaccatggcaagacatgttttgtagattgtttaatagag
cagacacacccggaaatcagaaagcgttatgaccaggatttatgctatactgacatcctc
ttcacagagcaagagagaggtgttggcatcaagagcactcctgtgactgtggtcctgcca
gataccaaaggaaaatcttacctcttcaatatcatggacacgccaggacatgtgaatttt
tctgatgaggtcacagctggcttgcgcatctcagatggagtggtccttttcatcgatgct
gctgagggggtgatgctgaacactgagcggctgatcaagcatgcagtgcaggagaggctg
gcagtcactgtgtgtatcaacaagattgacagactgatcctggagctgaagctgcctcca
actgatgcttactataagctgcgccacattgtggatgaagtcaatggattaataagcatg
tattccaccgatgagaacctgatcctttccccgctcctgggcaatgtctgcttctccagc
tcccagtacagcatctgcttcacgttgggctcctttgccaagatctatgctgacactttt
ggtgacattaattaccaggaatttgctaaaagactctggggtgacatctacttcaaccct
aagacgcgaaagttcacaaaaaaggccccaaccagcagctcccagaggagcttcgtggag
tttatcttggagcccctttataagatccttgctcaggtggtgggtgatgtggacaccagc
ttgccgaggaccctcgatgagcttggcatccacctgaccaaggaagagctgaagctgaac
atccgccccctgctcagactggtctgcaaaaagttctttggcgagttcacaggctttgtg
gacatgtgtgtacagcacatcccttctccaaaggtgggtgccaagcctaagattgagcac
acctacacaggtggtgtagactctgaccttggcgaggccatgagcgactgtgaccctgat
ggtcccctgatgtgtcacactactaaaatgtacagcacagatgatggagttcagtttcat
gcattcggccgggtactgagtggcaccatccatgctgggcagcctgtgaaggtgctgggg
gagaactatactctggaggatgaggaagattcccagatatgcactgtgggccgcctttgg
atctctgtggccaggtaccacattgaagtgaaccgtgttcctgcaggcaactgggttctg
attgaaggtgttgatcaaccaatcgtgaagacagcaaccataacggaaccccgaggcaat
gaggaggctcagattttccggcccttgaagttcaataccacatctgttattaagattgct
gtggagccagtcaacccctcagagctacccaagatgctcgatggcctgcgcaaggtcaac
aagagttatccgtccctcaccaccaaggtggaagagtctggcgagcatgtgatcctgggc
actggagagctctacctggactgtgtcatgcatgatctgcggaagatgtactcagagata
gacatcaaggtggctgacccagtggtcacgttttgtgagacggtggtggaaacatcctcc
ctcaagtgctttgctgaaacacccaataaaaagaacaagatcaccatgattgctgagcct
cttgagaagggccttgccgaagacatagagaacgaggtggttcagatcacatggaacaga
aagaagctaggagagttcttccagaccaagtatgattgggatctgctggctgcccgatct
atctgggcttttggccctgatgccacaggccccaacatcctggtggatgataccttgccc
tctgaggtggacaaggctcttcttggctcagtgaaggatagcatcgttcaaggtttccag
tggggaaccagggaggggcccctgtgtgatgaattgattcggaatgtcaagtttaagatc
ctggatgcggtggttgctcaggagcctctgcatcggggtggaggccagattatccccaca
gccaggagagttgtctattctgccttccttatggccactcctcgtctgatggagccttac
tactttgtagaggtccaggcccctgcagactgtgtatctgccgtttatactgtcctggcc
aggcgcaggggccatgtgactcaggatgcacccatcccaggctcccctctctacaccatc
aaagctttcattccagccatcgactcttttggctttgagactgatctccggactcatacc
cagggacaggccttttctttgtctgtcttccaccattggcagattgtacctggtgatcct
ctggacaagagcattgtcatccgccccttggagccacagccagctcctcacctggcccgg
gaattcatgattaaaacccgtcgtaggaagggcctgagtgaagatgtgagcatcagcaag
ttcttcgacgatcctatgttgctggagctcgccaaacaagatgttgtgctcaattacccc
atgtga
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