KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101956666
Entry
101956666         CDS       T10664                                 
Symbol
Traf6
Name
(RefSeq) TNF receptor-associated factor 6
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04010  MAPK signaling pathway
iti04064  NF-kappa B signaling pathway
iti04120  Ubiquitin mediated proteolysis
iti04140  Autophagy - animal
iti04144  Endocytosis
iti04380  Osteoclast differentiation
iti04517  IgSF CAM signaling
iti04620  Toll-like receptor signaling pathway
iti04621  NOD-like receptor signaling pathway
iti04622  RIG-I-like receptor signaling pathway
iti04657  IL-17 signaling pathway
iti04722  Neurotrophin signaling pathway
iti04936  Alcoholic liver disease
iti05132  Salmonella infection
iti05133  Pertussis
iti05135  Yersinia infection
iti05140  Leishmaniasis
iti05142  Chagas disease
iti05145  Toxoplasmosis
iti05152  Tuberculosis
iti05160  Hepatitis C
iti05161  Hepatitis B
iti05162  Measles
iti05168  Herpes simplex virus 1 infection
iti05169  Epstein-Barr virus infection
iti05170  Human immunodeficiency virus 1 infection
iti05171  Coronavirus disease
iti05200  Pathways in cancer
iti05222  Small cell lung cancer
iti05235  PD-L1 expression and PD-1 checkpoint pathway in cancer
iti05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:iti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    101956666 (Traf6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    101956666 (Traf6)
   04064 NF-kappa B signaling pathway
    101956666 (Traf6)
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    101956666 (Traf6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    101956666 (Traf6)
   04140 Autophagy - animal
    101956666 (Traf6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    101956666 (Traf6)
   04621 NOD-like receptor signaling pathway
    101956666 (Traf6)
   04622 RIG-I-like receptor signaling pathway
    101956666 (Traf6)
   04657 IL-17 signaling pathway
    101956666 (Traf6)
  09156 Nervous system
   04722 Neurotrophin signaling pathway
    101956666 (Traf6)
  09158 Development and regeneration
   04380 Osteoclast differentiation
    101956666 (Traf6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    101956666 (Traf6)
   05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
    101956666 (Traf6)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    101956666 (Traf6)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    101956666 (Traf6)
   05161 Hepatitis B
    101956666 (Traf6)
   05160 Hepatitis C
    101956666 (Traf6)
   05171 Coronavirus disease
    101956666 (Traf6)
   05162 Measles
    101956666 (Traf6)
   05168 Herpes simplex virus 1 infection
    101956666 (Traf6)
   05169 Epstein-Barr virus infection
    101956666 (Traf6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    101956666 (Traf6)
   05135 Yersinia infection
    101956666 (Traf6)
   05133 Pertussis
    101956666 (Traf6)
   05152 Tuberculosis
    101956666 (Traf6)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    101956666 (Traf6)
   05140 Leishmaniasis
    101956666 (Traf6)
   05142 Chagas disease
    101956666 (Traf6)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    101956666 (Traf6)
  09167 Endocrine and metabolic disease
   04936 Alcoholic liver disease
    101956666 (Traf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:iti04131]
    101956666 (Traf6)
   04121 Ubiquitin system [BR:iti04121]
    101956666 (Traf6)
Enzymes [BR:iti01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     101956666 (Traf6)
Membrane trafficking [BR:iti04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    101956666 (Traf6)
Ubiquitin system [BR:iti04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    101956666 (Traf6)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 Sina_ZnF TRAF3_RING RING_XB3-XBAT31 SlyX zf-RING_11 U-box DUF4455 CCDC18_1st Spc29 UPF0242 Filament Myosin_tail_1 DUF16 Exonuc_VII_L CCDC39 TMF_DNA_bd DUF7310 ATG16 PspA_IM30
Other DBs
NCBI-GeneID: 101956666
NCBI-ProteinID: XP_005327452
UniProt: I3M9G1
LinkDB
Position
Unknown
AA seq 530 aa
MSLLNCENSCGSSQSESNCCAAMANSCSTAIKDDSVSGSASTGNLSSSFMEEIQGYDVEF
DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD
NFAKREILSLTVKCPNEGCLHKMELRHLEDHQAHCEFALMNCPQCQRAFQKCQFNIHILK
DCPRRQVSCVNCAVSMAFEDKEIHDQNCPLANVICEYCNTVLIREQMPNHYDLDCPTAPI
PCSFSTFGCHEKMQRNHLARHLQENTQLHMRMLAQAVHSLNLAFDAASPSQMPSGYRPEI
ENFQEIIQQLEGRLVRQDHQIRELTAKMETQSMYVSDLKRTIRTLEDKVAEIEAQQCNGI
YIWKIGNFGMHLKSQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVH
TMQGEYDSHLPWPFQGTIRLTILDQSEAPIRQNHEEIMDAKPELLAFQRPTIARNPKGFG
YVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGGLRKEGFQPRSTDAGV
NT seq 1593 nt   +upstreamnt  +downstreamnt
atgagtctgttaaattgtgaaaacagctgtggatccagccagtctgaaagtaactgttgt
gctgccatggccaattcctgtagcactgcaatcaaagatgacagtgtgagtggaagtgcc
agcacaggaaatctctccagctcctttatggaagagatccagggatatgacgtagagttt
gacccacctctggaaagcaagtatgaatgccctatctgcctgatggccttacgggaagca
gtgcaaacaccatgtggtcataggttctgcaaagcctgcatcatcaaatccataagggat
gcaggtcacaagtgtccagttgacaatgaaatactgctggaaaatcaactctttcctgac
aattttgcaaaacgagagattctttctcttacggtaaagtgtccaaatgaaggttgtttg
cacaaaatggaactgaggcatctcgaggatcatcaagcacattgtgagtttgctcttatg
aattgtccacaatgccagcgtgccttccaaaaatgccaatttaatattcacatccttaag
gattgtccgaggagacaggtttcttgtgtaaattgtgctgtatccatggcatttgaagac
aaagagatacatgaccagaactgtcctttggcaaatgtcatctgtgaatactgcaatacc
gtgctcatcagagaacagatgcctaatcattatgatctagactgtccaacggccccaatc
ccatgttctttcagtactttcggttgccatgaaaagatgcaaaggaatcacttggctcgc
cacctgcaagagaatacccagttacacatgagaatgttggcccaggcagttcacagttta
aatcttgctttcgatgctgcctctccatcccagatgccttctgggtatcgcccagaaatt
gaaaatttccaggaaatcattcaacagttagagggtcgccttgtaagacaggaccatcaa
atccgggagctgactgctaaaatggaaactcagagtatgtatgtaagcgatctcaaacgg
actattagaacccttgaagacaaagttgctgaaattgaagcacaacagtgcaatgggatt
tatatttggaagattggtaactttgggatgcacttgaaatcgcaagaagaggagaaacct
gtggtcattcatagtcctggattctacacaggcaaacctggatataaattgtgtatgcgc
ctgcatcttcaattaccaactgctcagcggtgtgcaaactacatctcactctttgtccac
acaatgcaaggagagtatgatagccacctgccttggcccttccaaggtacaatacgcctt
acgattctggatcagtctgaagcacctataaggcaaaaccatgaagaaataatggatgcc
aaaccagagctgcttgccttccagcggcccacaatcgccaggaacccgaaaggtttcggc
tatgtaacttttatgcacctggaagccctaagacagagaaccttcattaaggatgataca
ttattagtgcgttgtgaagtctctacccgctttgatatgggtgggcttcggaaggagggt
tttcagccacgaagtacagatgcaggggtgtag

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