Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101960780
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Entry
101960780 CDS
T10664
Symbol
Smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X3
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101960780 (Smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101960780 (Smg6)
03032 DNA replication proteins [BR:
iti03032
]
101960780 (Smg6)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
101960780 (Smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
101960780 (Smg6)
DNA replication proteins [BR:
iti03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
101960780 (Smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
Motif
Other DBs
NCBI-GeneID:
101960780
NCBI-ProteinID:
XP_005327967
UniProt:
I3NHX0
LinkDB
All DBs
Position
Unknown
AA seq
1418 aa
AA seq
DB search
MAEGLERVRISASELRGILATLAPQAGSRENMKELKEPRQRKDNRRPDLEIYKPGLSRLR
NRPKIKEPSGSEEFKDEIVNDKNACAVGNGTQLIKDVCKELDNHQQNGPVDPENNQGQET
FPRTAGQEDRSLRIIKRTKKPDLQIYQPGRRLQTGIKDSASRVDEEEILNQVEQLKIEED
ECRGKVVKEEVVNKSDKAETEKSQNSDRVRTAKGEKGKRIEKGEGTKKLNDDLAQGKPGS
AKRYSRSDKRRNRYRTCSTSSAGSNNSTEGVGLTDNGCRRRRQDRTKERPRLKKQVSMSS
TDSLDEDRIDEPEGLGPRRSSEKKTHLERNWSGRGEGEQKSNGKENRGTLRVTFDAETMN
KDFPVMRSAREDVDKIKPDRGLSSGGKGSEKQDSKNMKQELRGRGRGILILPAHTALSVN
SAGSPESTPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKNQTPQLHFLDTD
DEVSPTSWDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYSPLQYPVGPTNGVYPG
PYYPGYPTPSGQYVCSPLPASTMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSR
DRISTEGMEKMAQLRAELLQLYERCILLDIEFSDTQNVDQILWKNAFYQVIEKFRQLLKD
PNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKMVKYA
LISAQRCMICQGDIARYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRR
KLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFELSPDQWRKGKKS
TFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHG
KLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSE
ECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQLSSPEDQDDEDDIKVSSFVPDLKE
LLPSVKVWSDWMLGYPDTWNPPPTSLDLPSQVAVDVWSTLADFCNILTAVNQSEVPLYKD
PDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQ
EEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDSEAEGSGGEDD
IRELRAKKLALARKIAEQQRRQEKIQAVLEDQSQMRQMELEIRPLFLVPDTNGFIDHLAS
LARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLERRFESR
DSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPTSKEEPIR
LLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggttggagcgtgtacggatctccgcgtcggagctgcgagggatcttggcc
actctggctccgcaggccgggagcagagaaaacatgaaggaattaaaggagcccaggcag
cgcaaagataacaggcgcccagatctggaaatctataagcctggtctttcccgactaagg
aacagacctaaaatcaaggagccctctgggagtgaggaatttaaagatgaaattgttaat
gataaaaatgcttgtgctgttggaaatggtacacagctcattaaagatgtctgcaaggaa
ctggataaccaccagcaaaatggtcctgtagacccagaaaataatcaaggacaggagact
tttcctaggactgctgggcaagaagatcgaagtctaagaatcatcaagagaacaaagaaa
ccagatttgcagatctatcagcctggtaggcgtttgcagactggtatcaaagattctgct
agccgggtggatgaggaggaaatcctcaaccaggtagaacagctgaaaatagaggaagat
gaatgtaggggaaaagttgtgaaagaggaagttgtgaataaatcagataaagctgagaca
gaaaagagccaaaatagtgacagagtaaggactgcaaaaggagaaaaaggaaaaaggatt
gaaaaaggggaggggacaaagaaactgaatgatgacctggcccaggggaagcctggttct
gcaaagcgctattcccgctcagacaaacggaggaaccgctatcgcacttgcagtaccagc
tcagctggtagcaacaatagtactgagggagttggcctgactgataatggatgtcgccgt
cgccgccaggataggaccaaggaaaggccacgactgaagaaacaagtatctatgtcctca
actgattctttagatgaggatagaattgatgagcctgaaggattggggcccaggaggagc
tcagaaaagaagacacacttagaaagaaactggtctggccgtggggagggtgaacagaaa
agcaatggtaaagaaaatcgaggcacacttcgtgtaacttttgatgcagaaaccatgaac
aaagatttccccgtgatgagatcagccagggaggatgtggataagataaaacctgacaga
ggtttgagcagtgggggcaaaggctctgagaagcaggattccaaaaacatgaaacaagaa
cttcggggtcgtggtcgtggcattttgatcctgcctgcccatactgccctatctgtcaat
tcagcaggttctccagagtctacgcctttaggacctcgacttttatttggatctggtagt
aaaggttctcggagttggggccgtggaggcaccacccgccgactatgggacccaaataat
cctgatcagaaacctgctctaaagaaccagacaccccagttacatttcttagacactgat
gatgaagtcagccctacatcatgggactcacgccaggcccaggcatcttactataagttt
caaaactctgacaatccctattattacccccggacaccaggccctgcctctcagtatccc
tatacagggtatagccctctgcagtacccagtaggccctacaaatggtgtgtacccaggg
ccttactacccaggctacccgactccttcaggacagtatgtatgtagccctctccctgcc
agtaccatgagtcctgaagagatagagcagcatgtgaggaacatgcagcagcaggagcta
cataggcttctccgggtagctgacaaccaggaactacagctcagcaacctgctttccagg
gatcgcatcagtactgagggcatggagaagatggctcagctcagagctgaactgctacag
ctgtatgagcgttgtattctgttagatattgagttctctgatactcagaatgtggatcag
atcttgtggaagaatgctttctatcaggtgattgagaagttcaggcagcttctcaaggat
cctaatgttgagaacccagaacagatacggaatagactcctggagcttttggatgagggt
agtgacttctttgatagtttgcttcagaagctgcaggttacttataagttcaaactagag
gactacatggatggtcttgccattcgcagcaagccattacgcaagatggtaaagtatgcc
ttaatcagtgctcagagatgtatgatttgccaaggagatatcgctaggtatcgggagcaa
gccaatgatacagcaaactacgggaaagcacgcagttggtacctgaaggcccagcacatt
gctcccaagaatgggcgcccctataaccagttggctttgctggcagtgtatacgaggagg
aagcttgatgctgtgtattactacatgcgcagtttagctgccagcaaccctatcctgact
gccaaggagagtcttatgagcttgtttgaagagaccaaacgaaaggcagaacagatggaa
aagaagcaacatgaagaatttgaactgagccccgatcaatggcgaaaaggaaagaaatct
actttccggcatgttggagatgacaccactcgcctggagatctggattcatccatcccat
cccaggtcctctcagggcactgagtctgggaaggattctgagcaggagaatgggctgggc
agcctgagtcccagtgatctgaacaaaaggttcatcctcagttttctccatgcccatggg
aagctgtttacccggattgggatggagacattccctgcagtggctgagaaggtcctcaag
gagttccaagtgttgctacagcatagcccatctcctattggaagtacccgcatgctgcag
cttatgaccatcaacatgtttgctgtacataattctcagttgaaagactgcttctcagag
gagtgtcgctctgtgattcaggagcaagcagcagccttgggcctggccatgttttctcta
ctggtgcgccgctgcacctgcttacttaaggaatctgccaaagctcaactgtcctctcct
gaggaccaggatgatgaagatgacatcaaagtgtcttcctttgtcccggacctgaaggaa
ctgcttcccagtgtgaaagtgtggtctgactggatgctcggctacccagacacctggaat
cctccacccacatccctggatctgccctcacaggttgctgtggatgtgtggtcaacactg
gctgatttctgtaacatattgactgcggtgaatcagtctgaggtgccactgtacaaggac
ccggacgatgacctcacccttcttatcctggaagaggatcgacttctctcgggctttgtc
cccttgctggctgcccctcaggacccctgctacgtggagaaaacctcggataaggttatt
gcagccgactgcaaaagggtcacagtactgaagtattttctggaagccctttgtggacaa
gaagagcctctgctggcattcaagggtggaaaatatgtgtcagtggcacccgtcccagac
accatgggaaaggaaatgggaagccaagagggaaaacaactggaagatgaggaggaagac
gtggtgattgaagactttgaggaagattcagaggctgaaggcagtgggggcgaggatgac
atcagggaacttcgagccaagaagctggctctagccaggaagatagctgagcagcagcgt
cgtcaagaaaagatccaggctgtcctggaggaccagagtcagatgaggcagatggagctg
gagatcagacccttgttcctcgtaccagacaccaacggcttcattgaccacctggccagt
ttggcgcggctgctggagagcaggaagtacatcctggtggtgcccctcatcgtgatcaat
gagttggatggcctggccaaggggcaggagacagatcaccgggctggcggttatgctcgt
gtggtgcaagaaaaggcccggaagtccattgagtttctcgagcgacgatttgagagccgg
gactcttgcctacgggccctgaccagccgaggcaatgaacttgaatccatcgccttccgc
agtgaagacatcactggccagctgggtaacaacgatgacctgatcctttcctgctgcctc
cactactgcaaagacaaagccaaggacttcatgcccaccagcaaagaggagccaatccgc
ctcctgcgggaggtggtgctgctgactgatgaccggaacctgcgtgtaaaggcactgacg
aggaatgtgcctgtgcgggacatcccagccttcctcacatgggcccaggtgggctga
DBGET
integrated database retrieval system
