KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101961690
Entry
101961690         CDS       T10664                                 
Symbol
Smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30 isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:iti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101961690 (Smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:iti03041]
    101961690 (Smndc1)
Spliceosome [BR:iti03041]
 Complex A
  U2 snRNP components
   U2 related factors
    101961690 (Smndc1)
 Complex B
    101961690 (Smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    101961690 (Smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR TraX-like
Other DBs
NCBI-GeneID: 101961690
NCBI-ProteinID: XP_005320723
UniProt: I3M792
LinkDB
Position
Unknown
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSFASAQPTHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaggatctagcaaaacagctggcaagctacaaagctcaactccagcaagtagaa
gctgcattatctggaaatggagaaaatgaagatttgctaaaattgaagaaagatttacaa
gaagttatagaactaaccaaagatctcctgtcaactcaaccatcagaaactcttgcaagt
tcagatagttttgcttctgctcagcctactcattcatggaaagttggagacaagtgtatg
gcaatctggagtgaagatggacagtgttacgaagcggagatcgaggagatagatgaagaa
aatggcaccgctgcaattacctttgctggttatggcaatgctgaagtgactccactgttg
aacctgaagcctgtagaagaaggaaggaaggcaaaggaggacagtgggaataaacccatg
tcaaaaaaggaaatgattgcccagcagcgtgaatacaaaaagaagaaagctttgaaaaaa
gcacagagaataaaagaacttgaacaggaaagagaggaccagaaggtgaaatggcaacaa
ttcaacaacagagcctattctaaaaacaaaaaaggccaggtaaagaggagtatttttgct
tcacctgagagtgttactggcaaagttggagtaggaacttgtggaattgctgataaacct
atgacacagtatcaagatacctctaaatataatgtcaggcatttgatgcctcaataa

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