Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101965031
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Entry
101965031 CDS
T10664
Symbol
Pcdh15
Name
(RefSeq) protocadherin-15 isoform X4
KO
K16500
protocadherin-15
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
101965031 (Pcdh15)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
iti03037
]
101965031 (Pcdh15)
04515 Cell adhesion molecules [BR:
iti04515
]
101965031 (Pcdh15)
Cilium and associated proteins [BR:
iti03037
]
Primary cilia and associated proteins
USH complex and associated proteins
101965031 (Pcdh15)
Cell adhesion molecules [BR:
iti04515
]
Cadherins
Protocadherins
101965031 (Pcdh15)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
PCDH15_12th
ECD
Ig_CLSTN
Cadherin_FAT4_N
Ig_Cad99C_N
Cadherin_CELSR2_9th
CDH23_a-b
CR_prot_dom_plant
PRIMA1
Motif
Other DBs
NCBI-GeneID:
101965031
NCBI-ProteinID:
XP_021576853
LinkDB
All DBs
Position
Unknown
AA seq
1455 aa
AA seq
DB search
MLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQ
CINKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFSGDNGATDI
DDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYFVIIQANDRAQ
NLNERRTTTTTLTVDILDGDDLGPMFLPCVLVPNTRDCRPLTYQAAIPELRTPEELNPIV
VTPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDYPRFFHMHPRTAELSLLEPVNRDFHQ
KFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPSYQGYILESAPVGATISDNID
LTTPLRIIALDKDIEDTKDPELHLFLNDYTSVFTVTQTGVTRYLTLLQPVDREEQQTYTF
SITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYVYTDMSAGDSVIQLTAVDADEG
SNGEITYEILVGAQGDFIINKTTGLITIAPGVELIVGRTYALTVQALDNAPPAERRHSIC
TVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLLNLQATDREGDSITYAIENGDPQR
VFNLSETTGILTLGKALDRESTDRYILIVTASDGRPDGTSTATVNVVVTDVNDNAPVFDP
YLPRNLSVVEEEVNAFVGQVRATDPDAGINGQVHYSLGNFNNLFRITSNGSIYTAVKLNR
EVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVVEENLPAGTTFL
KIEAKDVDLGANVSYRIRSPEVKHFFALHPFTGELSLLRSLDYEAFRDQEASITFLVEAF
DIYGTMPPGIATVTVVIKDMNDYPPVFSKRIYKGMVAPDAVKGTPITTVYAEDGDPPGLP
ASRVRYRVDDLQFPYPASIFDVEEDSGRVITRVNLNEEPTTIFKLVVVAFDDGEPVMSSS
ATVKILVLHPGEIPRFTQEEYRPPPVSELAARGTTVGVISAAAINQSIVYSIVSGNEEGK
FGINNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNIAKVYIEIQDENN
HPPVFQKRFYIGGVSEDARMFASVLRVKATDKDTGNYSAMAYRLIIPPIKEGKEGFVVET
YTELIKTAMLFHNMRSYFKFQVIATDNYGKGLSGKADVLVSVVNQLDMQVIVSNVPPTLV
EKKIEDLTEILDRYVQDQIPGAKVVVESIGARRHGDAFSLEDYSKCDLTVYAIDPQTNRA
IDRNELFKFLDGKLLDINKDFQPYYGEGGRILQIRTPEAVTSIKKRGESLGYTEGALLAL
AFIIILCCIPAILVVLVSYRQFKVRQAECTKTARIQSALPAAKPAAPAPTPMAAPPPPPP
PPGAHLYEELGDSAMSYPWSLELILARNMDKIITVMSMGMKCLNMEVDVDCYHLLDRRNM
VRWLVKLRRNMRRKR
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgctgataaaagggactgctggaggaccagaccccaccatagaactctctttaaaggac
aacgtggattactgggtgttattggatcctgttaaacaaatgcttttcctgaacagcaca
ggcagagttctggacagagatccaccaatgaacatccactccattgtggtgcaagtccaa
tgcatcaacaaaaaagtgggcaccgtcatctaccatgaagtgagaattgtggtgagggat
aggaatgacaactcacccaccttcaaacatgaaagctactatgccactgtgaacgagctc
actccagttggcaccacagtatttacaggattttcaggagacaatggagctactgacata
gatgatggcccaaatggacagatagaatatgttattcaatacaatccagaagatccgaca
tccaatgacacctttgaaattccccttatgttgactggaaatgtagtgttaaggaagaga
ctcaattatgaagacaagactcgatacttcgtcatcatccaagcaaatgaccgtgcacaa
aatctgaatgaaaggcggaccaccaccaccacactcaccgtggatatcctggatggagat
gacttaggtcccatgtttcttccttgtgtccttgtgccaaacactcgagattgccgacca
ctcacctatcaagctgccatacctgagctgagaactccggaagaactgaaccccattgtt
gttactccaccaatccaagccattgatcaggaccggaatattcagccaccatcagatagg
cccggcatcctctattccatccttgttgggactcctgaggattacccacggtttttccat
atgcatcctaggactgcagaacttagtctgctggagcctgtaaacagagactttcatcag
aaatttgatttggttattaaggctgagcaagacaatggccatcccctccctgcctttgcc
agtttacacattgaaatactggacgagaacaaccagagcccctatttcacaatgccaagc
tatcaaggctacatccttgaatctgccccagtgggagcaaccatttctgacaatatagat
ttaaccactcctctaagaattatagctctggacaaagacatagaagatacaaaagatcca
gagcttcacctttttctgaatgattacacatcagtcttcactgtcacgcagactggtgtc
actcgctacctcaccctgctgcaaccagtggacagggaagaacagcaaacttacacattt
tcgataacagcatttgatggagtacaagaaagcgagccagttattgtcaatattcgagtg
atggatgcaaatgacaatactccaaccttcccagaaatatcctatgatgtctatgtatac
acagacatgagcgcgggagacagtgtcatacagctcactgcagtcgacgcagatgaaggg
tcaaatggggagatcacatatgagatcctggttggggctcagggagacttcatcatcaat
aaaacaacagggcttatcaccatcgctccgggggtggaattgatagtcgggaggacttat
gcgctcacggtccaagcattggataatgctcctcctgcagagagaaggcactccatctgc
acagtgtacattgaagtgcttcctccaaataatcaaagccctccccgctttccacagctg
atgtacagccttgaaatcagtgaagccatgaggattggtgctgttttattaaatctacag
gcaactgatcgagagggagactcaataacatatgctattgagaatggcgatcctcagcga
gtttttaatctttcagaaaccacagggattctcaccttagggaaagcactggacagggaa
agcaccgatcgctacattctgattgtcacagcttcagatggcaggccagatgggacctca
actgctacagtaaacgtggtagtgacagatgtcaatgacaatgctccagtgtttgatcca
tatctgcctagaaacttatctgtggtggaggaggaagtcaatgcctttgtgggtcaagta
agggcaacagaccctgatgctggaataaatggccaagtgcactacagtttgggtaacttc
aataatcttttccgcatcacatccaatgggagcatttacaccgcagtgaagcttaacaga
gaagtcagggactactatgaacttgttgtggtggcaactgatggagcagtacaccctcgt
cattcgactctaacactggccatcaaggttttggatattgatgacaatagtccagtgttc
accaattcaacatacactgttgttgtggaagagaatctgccagctgggaccaccttcctt
aaaatagaggctaaagatgttgaccttggagcaaatgtgtcatatcggataagaagccct
gaagtgaagcacttttttgcactacatccatttacaggagagctgtcccttttgaggagt
ttggattatgaggcatttcgagaccaggaagcaagtatcacttttctggtggaggccttt
gatatttatggaacaatgcctcctggtattgctactgtcacagtggttataaaggatatg
aatgattatcctcctgtatttagtaaacggatctacaaagggatggtggctccagatgca
gtcaagggtacacctatcactacagtttatgctgaagatggagaccctcctgggttacct
gcaagtcgtgtgagatacagagtagatgatttgcagtttccttatcctgccagtattttt
gatgtagaggaagattctggaagagtaataactcgagtcaatcttaatgaagaaccaaca
acaatttttaagttggtggttgttgcttttgatgatggtgagcccgtgatgtccagcagt
gccacagtgaaaattcttgtcttacatcctggagaaatcccacgattcacacaagaggaa
tatagacctcctccagtaagtgaacttgcagccagaggaaccacagttggtgtaatttct
gctgcagccatcaatcaaagcattgtgtattctattgtttcaggaaatgaagaaggtaag
tttggaatcaataacatcacaggtgtcatctatgtgaatgcccccctggattatgaaaca
agaacaagttatgtgcttcgagtccaagcagattccctggaagtggtcctcgccaatctc
cgagttccttcaaaaagcaatatagctaaagtatacattgagattcaggatgaaaataat
catcccccagtgtttcagaaaagattctacattggaggagtatctgaagatgcaagaatg
tttgcttctgtgctcagagtaaaggctactgataaagatactggtaattatagtgctatg
gcatacagactcataataccaccaattaaagagggaaaagaagggtttgtggtggaaaca
tacacagaactcatcaagactgctatgctcttccataatatgagatcttacttcaaattt
caagttattgcaactgacaactatgggaagggactgagtggaaaagctgatgtacttgtc
tctgtggtcaatcagctggatatgcaagtcattgtttccaatgtgccacctactttagtg
gaaaaaaagatagaagatcttacagagattttggatcgctatgttcaggatcaaattcct
ggtgccaaggtggtggtagaatccattggtgctcgccggcatggggatgccttttcttta
gaagattacagcaaatgtgacctgactgtctatgcaattgatccccaaaccaacagagcc
attgacagaaatgaactttttaaatttttggatggcaagctgcttgatatcaataaagat
tttcaaccatattatggggaaggagggcgcattctgcagatccgaactccagaggcagtg
accagcattaaaaagcgaggagaaagtttaggatacacagaaggggctctgttggctctg
gccttcatcatcatcctctgctgtattcctgccatcttggtggtcttagtcagctacaga
cagtttaaagtacggcaagctgaatgcaccaagacagcacgaattcagtctgcactacct
gcagcaaagccagcagcaccagctcccactccaatggcagcgcctccaccacccccacca
cctccaggggcacatctctatgaagaacttggagacagcgcaatgagttatccatggagt
ctggaattgatcctggccaggaatatggacaagattattacagttatgagcatgggtatg
aaatgcctcaatatggaagtcgacgtcgattgttaccacctgctggacaggaggaatatg
gtgaggtggttggtgaagctgaggaggaatatgaggaggaagaggtaa
DBGET
integrated database retrieval system
