Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101966266
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Entry
101966266 CDS
T10664
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101966266 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iti03400
]
101966266 (Lig4)
Enzymes [BR:
iti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101966266 (Lig4)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101966266 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
101966266
NCBI-ProteinID:
XP_005317049
UniProt:
I3NG11
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MATSQTPQTVASHVPFADLCSTLERIQKSKGRVEKIRHFKEFLDSWRKFHDALHKNQKTV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTGTRG
EAGDFAMIAYFVLKPRCLQKGSLTIQQVNELLDSVASNNSAKRKDLVKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGVSQQTIFSVFHSDAVELHNVTTDLEKVCTQLHDPSVGLTDISI
TLFSAFKPMLAAIANIEHIEKDMRHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYTE
QFGASPQEGSLTPFIHNAFQPDVQTCILDGEMMAYNPNTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGREILRKRYEILGSTFTPIPGRVEIVQKAQAHTKNEVVDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVTGLMDELDILIVGGYWGKGLRGGMM
SHFLCAVAEKPPPGKKPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKAFHRKAPPGSILC
GTEKPEVYIQPCNSVIVQVKAAEIVPSDMYRTGCTLRFPRIEKIRDDKEWHECMTLEDLE
QLRGKASGKLASKHFYPGGDDEPQEKKRRAPPKVKKAVGIIEHLKAPNLSNVSKVSNIFE
DVEFCVMSGTDSHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSDTHDV
VKPAWLLECFETKSCVPWQPRFMIHMCPSTKQHFAREYDPYGDSYFVDTDLNLLKEVFSG
IKNSNEQTPEEMASVIADLEYRYSWDCSPLSMFRHHTIYVDMYAVINDSSTRIEGTRLAI
SALELRLHGAKVAAHLAEGVSHVIVGEDRSRVSDFKAFRRTLKKKFKILQERWVTDSIDK
CELQEENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctacctcacaaactccgcagactgttgcatctcatgttccctttgcagatttatgt
tcaactttagagcgaatacagaaaagtaaaggacgtgtagaaaaaatcagacacttcaag
gaatttttagattcttggagaaaatttcatgatgcacttcataagaaccaaaaaactgtt
acagattctttttatccggccatgagacttattcttcctcagctagaacgagagagaatg
gcttatggaatcaaagaaactatgctggccaagctttatatcgaattgcttaatttgccc
agggaagggaaagatgcccttaagctcctcaattacaggacccccactggcacgcgtgga
gaggctggggactttgcaatgattgcctactttgtgctgaagccccgatgtttgcaaaaa
ggaagtttgaccatacagcaagtaaatgaacttttagattccgttgccagcaataattct
gccaaaagaaaagacttggtgaaaaagagtcttcttcagcttataactcagagttcagca
ttggaacaaaagtggcttatacgaatgattgtgaaggacttaaagcttggtgttagtcag
caaactatattttctgtttttcacagcgatgctgtcgagttgcataatgttaccacggat
ctggaaaaagtctgtacacagctgcatgatccctctgtaggactcactgacatttccatc
actttgttttctgccttcaaaccaatgctagctgcaatagcaaacattgagcacatcgag
aaggatatgagacaccagagtttctacatcgaaaccaaacttgatggtgagcggatgcag
atgcacaaagatggcgatgtttatcagtacttttcccgaaatggctataactacactgaa
cagtttggtgcctctccgcaagagggttctctcaccccattcattcataatgcattccag
ccagatgtgcaaacctgtatccttgatggagagatgatggcctacaacccgaacacacag
acttttatgcaaaagggcaataagtttgatattaaaaggatggtggaagattctgatctg
cagacttgttattgtgtgtttgacgtgttgatggttaataataaaaagctaggacgtgag
atcctgaggaaaaggtatgagatccttggcagtacctttacaccaataccaggccgagtg
gagatagtgcagaaagcacaagctcataccaagaatgaagtcgtcgacgcattgaatgaa
gcaatagataagagagaggaggggatcatgataaaacatcccttgtccatttacaagcca
gacaaaagaggtgaaggatggttaaaaattaagcccgagtatgtcactggactaatggat
gaattggatatcttaattgtgggaggctattggggtaaaggtttgcggggtggaatgatg
tctcattttttgtgtgcagtagcagagaagccccctcctggtaagaagccgtctgtgttt
catactctctgtcgtgttggctcaggatacaccatgaaagaactgtatgatctaggtttg
aaattggccaaatactggaaagcttttcatagaaaagctccaccaggcagcattttgtgt
ggaacagagaagccagaagtgtacatccagccttgcaattctgtcatcgtccaggttaag
gccgcagagattgtccccagtgatatgtacagaactggctgcacgttgcgttttccgcgg
attgagaagatcagggatgacaaggagtggcatgagtgcatgaccctggaggacttagaa
cagctgcgggggaaggcctctggaaagctcgcttcaaagcacttttacccaggtggagat
gatgaaccgcaagagaaaaagcggagagcacccccaaaggtgaagaaggctgttggaatt
attgaacacctaaaggcacctaacctttctaacgttagcaaagtttccaatatatttgaa
gatgtcgagttttgtgtaatgagtggaacagacagccatccaaagcctgacctggagaac
agaattgcagagttcggtggctatattgtacagaatccaggcccagacacatactgtgta
attgcaggttctgagaacatcagagtgaaaaacattatttcttctgatacacatgatgtt
gtcaagcctgcgtggcttttagaatgttttgagaccaaaagctgtgttccatggcagcct
cgctttatgattcacatgtgcccatcaacaaaacagcattttgcccgtgaatatgatccc
tatggtgacagttattttgttgatacagatttgaacctactgaaagaagtgttctcagga
attaaaaattctaatgaacagactcctgaagaaatggcctctgtgattgctgatttggag
tatcgatactcctgggactgctctcctctcagtatgtttcgacaccacaccatttatgtg
gacatgtacgctgttattaatgactcgagtaccagaatcgagggaacgagattagccatc
agcgccttggagctccggttacacggggcaaaggtggctgctcacttagctgagggagtg
tcccatgtaattgttggggaggatcgcagtcgtgtttcggattttaaagcttttagaaga
actcttaagaagaagtttaagatccttcaagaacgctgggtaactgactcgatagacaag
tgtgagttacaggaagaaaatcagtatttgatataa
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