Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101968273
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Entry
101968273 CDS
T10664
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101968273 (Smchd1)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101968273 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
101968273
NCBI-ProteinID:
XP_005337177
UniProt:
I3N8L1
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All DBs
Position
Unknown
AA seq
2002 aa
AA seq
DB search
MAAADASGPSVGTEEDGGGGGPRMVYLFDRREKESELGERALQVAEHTDYAAFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNVGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPAESQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHNLIIEEKERDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEIR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTASDSFEFKAHVEGDGVV
EGIIRFHPFLYDRETYPDDPCFPSKLKDEEDDDDCFMLEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDEVKT
VPIAKLDRTVAEKTVRKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHTSQLITDIQPVLEASGLSLHYEEITKGPNCIIRGVTVKGPVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPRHLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIVHCKFSGAPNLPVYTVDCSSSGTSILTGSAIHVQNIKKDQTLKARIEIPSCKDVSP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREINI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEAKHLKCELKGGKTVQMGQELQGEVVLIVTDQYGNQISAFSPDCLSALSIAGVGLDN
SNLKTTLQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKEPIPVINGRELQNPLTVQLCDQWDNPAPVPHVKINLIKANNLKLMPSNQQHKTDEKG
RANLGVFIVVAPRGEHIMQVKAVYNKSTIEGPIIKLMILPDPEKPIRLNVKYDKDACFLA
GGVFTDFMVSVISEDDSIIKNINPARISMKMWKLVSSMNRPPANAETFSCNKIKDNDKED
GCFYFRDKVIPNKVGTYCIQFGFMMDKTNVLSSEQVMIDVLPNQPVKLVPEIQPATPAVS
NVRSVASRTLVKDLRLSITDEYGNHTGINMVGTIVATIKGFHEEDTDTPLFIGKIRTLEF
PFVNGSAEITSLVLAENSPGRDSTEYFIVFEPRLPSLSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKSIVMYRSLFDASKQLLDEIKCQVEEAKLKEAQLRNELKAHNIDIPVTQ
QIPHIEALLKRKMSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHFRNGKLYFKP
IGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLGSVN
EDLNGQLEYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPTRKGNDTLRHSTKVEMTDCP
IPPKRMRRETTRQNRIPTKSDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacgccagcgggccctctgtggggactgaggaggacggcggaggcggt
ggccccaggatggtgtacttgtttgaccggcgcgagaaggagtccgagctcggggagcgg
gcgctgcaggtggcggagcacacggactacgcggcgttccgcgcctccgtgtgtcagaca
cttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgaaactgttaaagatggagtcactctgtacctgttacagtcagtc
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcattatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgcggaattaatcgacaattcattgtctgctacttctcgtaatgttggtattaga
agaatacagatcaaattgctttttgatgagacacaaggaaaacctgctgttgcagtaata
gataatggaagaggaatgacttctaaacagcttaacaactgggctgtgtataggttgtca
aaatttacacggcaaggtgactttgaaagtgatcattcagggtatgttcgtccagtacct
gtgccacggagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagtaaacctgcagagtcccaagatgttcat
gagcttgtactttctaaagaagattttgagaagaaggaaaaaaataaggaggcaatatat
agtggatatattagaaacagaaagccatctgattcagttcacattacaaatgatgatgaa
agatttctacataatcttatcatagaggagaaagaaagagatagctttactgctgtggtt
atcacaggggtacaacctgaacacatacagtacttgaaaaattatttccatctttggaca
cgacagttagcgcatatttatcattactatattcatggcccaaaaggtaatgaaatacgt
acatcaaaagaagttggacctttcaacaatattgacattgaaatttctatgtttgaaaaa
gggaaggctcctaagattgtcaacctaagagaaatacaagatgacatgcagacgttgtat
ataaacacagcatctgatagttttgagttcaaggctcatgttgaaggagacggtgtagtg
gaagggataatccgatttcatcctttcttgtatgatagagagacttaccctgatgatcca
tgctttccatcaaaattaaaagatgaagaggatgatgatgattgtttcatgcttgagaaa
gcagcaagagggaaaagacctatttttgaatgtttttggaatggacgattaataccatac
acatcagttgaagattttgactggtgtactcctcctaagaagagagggcttgcaccaatt
gaatgctacaacagaatatctggtgcattattcactaatgacaaatttcaggtcagcaca
aataaactgacattcatggatcttgagttgaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgaccgagaatttgcattatggctg
aaggactgtcatgaaaagtatgacaaacagataaaatttacactttttaaaggaataatt
acccgtcctgatcttccctctaaaaagcaaggcccctgggcaacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacactccccctc
ttttatggaagcatagtaagattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaagttcaaattgcaatggaacctcaggcactatatgatgaagtgaaaact
gtcccaattgcaaagctggataggacagtcgctgagaaaactgtgagaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaattg
ttgcctaatgagattaggcctgctggaacccctattggtgcattaagaattgaaatactg
aataaaaagggagaggcaatgcaaaagcttccaggaacaagtcatggaggttcaaagaaa
ctcctagttgagcttaaagttatattgcactcttcaagtggaaataaggaaatcatttct
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttgggaaattacacattgaaattgcaagttgtacttaatgaaagtaatgcagatacc
tatgcaggaagaccactaccatctaaagcaattaaattctctgttaaagagggcaagcca
gagaaattttcttttggtcttctggatcctccttttcgtgttggagttccattcaacatc
cctttggaatttcaggatgaatttggtcataccagccaactaataactgatattcagcca
gttcttgaagcaagtggtttatctttacattatgaagaaataaccaaaggaccaaattgt
ataattcgtggtgttacagttaagggtcctgtaaattcttgtcaaggcaagaattttaac
ctgaaggttattctgccaggtttaaaagaagactcacagattttgaaaattagattacta
cctggtccccctcgtcatttgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtggaagttctagatgaatcagacaacataacagcacaa
ccaaaactgattgtccattgtaagttttcaggtgctccaaaccttccagtctacacagtg
gattgcagtagttctggaaccagtattttaacaggatctgcaattcatgttcagaatatt
aaaaaagaccagacacttaaagcaagaattgaaatacctagctgtaaagatgtgtcacct
gtggagaagacgatcaagttgcttcctagtagccatgttgcacgacttcagatatttagt
gtagagggacaaaaggcaatccagatcaagcatcaggatgaggttaattggatagcaggg
gatgttatgcgtaatcttatttttcaaatgtatgatgaaggagaaagagaaatcaacata
acatcagctttagcagaaaaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgctat
tgccaagtttcatttcaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaagccaaacatttaaaatgtgaattaaaggggggaaaaacagtacaaatg
ggccaagagcttcaaggagaagtagtcctaatagttacagatcagtatggaaatcagatt
tcagcattttcaccagattgtttatctgctttgtcaattgctggggttggacttgataac
tcaaatttgaaaacaactttgcaggaaaacacacaaagtataagtgtaagagggatcaaa
tttattccaggtcctcctggaaataaggatctttgttttacttggcgtgagttttctgac
tttattcgagttcagctaatttctggacctccagctaaacttctccttatagattggcca
gaactaaaagagcccattccagtgattaatggaagagaattacaaaatcctctcactgtt
caactttgtgatcagtgggataatccagcaccagtaccacatgttaaaataaatctcata
aaagctaataatttaaagctcatgccttcaaaccagcagcataaaacagatgaaaagggc
agggctaatttgggagtgttcattgttgttgcccctaggggagaacatattatgcaggtt
aaagctgtctataacaagagtactatagaaggacctataattaagttaatgattcttcca
gatcctgagaaacccattcgtctcaatgttaaatatgacaaagatgcttgctttttagca
gggggtgttttcactgattttatggttagtgttatttctgaagatgacagtatcattaaa
aatatcaacccagcacgtatttccatgaaaatgtggaagctggtaagcagtatgaaccga
ccaccggcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaggaagat
ggttgcttctatttcagggataaagtaattcctaacaaagtggggacatactgtatccag
tttggttttatgatggataaaacaaatgttctcagcagcgaacaggttatgattgatgtt
ctacctaatcagcctgtgaagttggttcctgaaattcagccagctactccagctgtttct
aatgttcgctcagttgccagtaggaccttggtcaaagatttacgcctcagtatcacggat
gaatatggcaatcatactggaataaatatggttggcactatagtagctaccattaaaggt
tttcatgaggaagacactgatactccactctttatcgggaaaattagaacacttgaattt
ccctttgtgaatggttcagctgaaatcacgagtctagtactggcagaaaatagtcctgga
agggatagtactgaatattttattgtttttgagcctcggctaccatctttatcaagaaca
ttagaaccatatatcctaccatttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccagttatctaagtctattgttatgtatagaagttta
tttgatgccagcaaacagcttcttgatgaaatcaaatgccaagttgaggaggcaaaatta
aaagaggcccagttgcgaaatgaactgaaagcacataatattgacattcctgtaacacaa
cagataccgcacattgaagcacttttgaaaagaaagatgtcagaacaagaagaactaaag
aaaaaacccagaagatcatgtactctaccaaactatacaaaaggcagtggagatgttttg
gggaagatagcacatctagcacaaattgaagatgatagagctgcaatggttatttcttgg
catctggcaagtgacatggattgtgtggtcaccctaaccactgatgctgctcgtcgtatc
tatgatgaaacccaaggtcgtcaacaggtgttacccctggattctatttataagaagact
cttccagattggaaaagacctctacctcattttcgaaatggaaaattatattttaaaccc
attggagacccagtttttgcccgagatttgttaacatttccagataatatagaacactgt
gaaacagtatttggtatgctgttaggagacaccattattttggataatctagatgcagcc
aatcattatagaaaagaggttgttaaaattacacactgtcccacattgctgaccagagat
ggagatcgaattcgaagtaatggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcgaggaatggtatttggagctccagtcccaaaacagtgtctgatcttaggg
gaacaaatagatcttcttcaacagtatcgttctgctgtgtgcaagctaggcagtgtgaat
gaggaccttaatggtcagttagaataccttcatactcctgatatgaagaagaaaaagcaa
gaactagatgaacaagaaaagagtctgaaactaatagagcagaaacttggtatgactccc
acacgtaagggtaatgatacattgcgtcattcaacaaaagttgagatgacagattgtcca
attcctcctaaaagaatgagaagagaaactacaagacaaaataggattccaactaaatca
gatgtataa
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integrated database retrieval system
