Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101968295
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Entry
101968295 CDS
T10664
Symbol
Dhx9
Name
(RefSeq) ATP-dependent RNA helicase A isoform X1
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
iti03041
]
101968295 (Dhx9)
03012 Translation factors [BR:
iti03012
]
101968295 (Dhx9)
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
101968295 (Dhx9)
5.6.2.6 RNA 3'-5' helicase
101968295 (Dhx9)
Spliceosome [BR:
iti03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101968295 (Dhx9)
Translation factors [BR:
iti03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101968295 (Dhx9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Dicer_dimer
nSTAND3
AAA_19
ResIII
ATPase
AAA_14
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
101968295
NCBI-ProteinID:
XP_013211639
UniProt:
I3MRA0
LinkDB
All DBs
Position
Unknown
AA seq
1328 aa
AA seq
DB search
MGDVKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYTGMGNSTNKKDAQSN
AARDFVNYLVRINEVKSEEVPAMGIAPPPPTVPAETSETTASTGGELPTTMGGPLPPHLA
LKAENNSGGASGFGGAPGPTWDRGANLKDYYSRKEEQEVQATLESEEVDLNAGLHGNWTL
ENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLA
AQSCALSLVRQLYHLGVIEAYSGLTKKKEGETVEPYRVNISQDLEHQLQNVIQELNLEIV
PPPIDPSMPVMLNIGKLAHFEPSQRQNQVGVVPWSPPQSNWNPWTSSNIDEGPLAYATPE
QISLDLKNELMYQLEQDHDLQAVLQERELLPVKKFESEILEAISQNSVVIIRGATGCGKT
TQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFESI
LPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVLAYPEVR
IVLMSATIDTSMFCEYFFNCPIIEVYGRTYPVQEYFLEDCIQMTQFVPPPKDKKKKDKED
DSGEDDDANCNLICGDEYGPETKMSMSQLNEKETPFELIEALLKYIETLNVPGAVLVFLP
GWNLIYTMQKHLEMNPHFGTHRYQILPLHSQIPREEQRKVFDPVPVGVTKVILSTNIAET
SITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCS
RARFERLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRE
LDALDVNDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISAATCFPEPFISEGK
RLGYIHRNFAGNRFSDHVALLSVFQAWDDARMSGEEAEIRFCEHKRLNMATLRMTWEAKV
QLKEILINSGFPEDCLLTQVFTNTGPDNNLDVVISLLAFGVYPNVCYHKEKRKILTTEGR
NALIHKSSVNCPFSSQDMKYPSPFFVFGEKIRTRAISAKGMTLVTPLQLLLFASKRVQSD
GQIVFVDDWIRLQISHEAAACITALRAAMEALVVEVSKQPNIISQLDPVNEHMLNMIRQI
SRPSAAGINLMIGSARYGDGPRPPKMARYDNGSGYRRGVSGYGGGGYGTGGYGGGYNSGG
FGGGGYGGGGGGGGGGGGGGYGGGGGYGGGSNSYRGGYGGGGGGGGGGYRGGFRGGYRGN
FGGDYRGSGGDYRGSGGDYRGSGGDYRGCGGGDYRGSGGGYRGSGGFHRGRGGYGGGYFG
QGRGGGGY
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacgttaaaaattttctgtatgcctggtgtggcaaaaggaagatgaccccagcg
tatgaaattagagcagtagggaacaaaaacaggcagaaattcatgtgtgaggttcgagta
gaagggtttaattacactggcatgggcaactctaccaataaaaaagatgcacagagcaat
gctgccagagactttgttaactatttggttcgaataaatgaagtaaagagtgaagaagtc
ccggctatggggattgcccctcctccacccactgttcctgctgagacatctgaaaccaca
gcaagtactggaggagaattaccaacaaccatgggaggacctcttcctccacatttggct
ctcaaggcagaaaataattctgggggagcatctggctttggtggtgctcctggaccaacc
tgggaccggggagccaacttgaaagattactactcaagaaaggaggaacaagaagtacaa
gcgactctagagtcagaagaagtagatttaaatgctggacttcatggaaattggaccttg
gaaaatgctaaggctcgcctgaaccagtatttccaaaaagaaaagatccaaggagaatat
aaatacacccaagtgggtccggatcacaacaggagctttattgcagaaatgaccatttat
atcaagcagctgggcagaaggatttttgcacgtgaacatggatcaaataagaaattggca
gcacagtcctgtgccctatcacttgtcagacagctctatcatcttggagtgattgaagct
tactctggacttacaaagaagaaagaaggagagacggtggagccttacagagttaacatc
tctcaagatttagagcatcaacttcaaaatgtgattcaagagctaaatcttgaaattgtg
cccccacctattgatccttctatgccagttatgctcaacattggaaaattggctcatttt
gaaccatctcagcgtcaaaaccaagtgggtgtggttccttggtcacctccacaatccaac
tggaatccttggactagtagcaacattgatgagggtcccctggcttatgctactccagaa
caaataagtttggacctcaagaatgaattgatgtaccagctggaacaggatcatgacttg
caagcagttttgcaggagagagagttattacctgtgaagaaatttgaaagtgaaatcctg
gaagcaattagtcaaaattcagttgtcattatccgaggggctactggatgtggtaaaacc
acacaggttccacagttcatactggatgactttatccagaatgaccgagcagcggagtgt
aatatcgtagtaactcaacccaggagaattagtgcagtttctgtggcagagcgagttgca
tatgagagaggagaagaacctggaaaaagctgtggctatagtgttcgatttgagtctata
cttccccgtcctcatgccagtataatgttttgtactgtgggagtgcttctcagaaaatta
gaagcaggcattcgaggaatcagtcatgtaattgtagatgaaatacatgaacgagacatc
aatactgacttcctcttggtagtactgcgtgatgtggttttggcttatccagaagttcgc
atagttcttatgtctgctactattgataccagcatgttctgtgaatatttcttcaactgc
cccataattgaagtttatgggaggacttacccagttcaagaatattttctggaagattgt
attcagatgacccagtttgttcctccaccgaaggacaagaaaaaaaaggacaaggaggat
gatagtggtgaggatgatgatgcaaattgcaacctgatctgtggagatgaatatggtcca
gaaacaaaaatgagcatgtctcagttgaatgaaaaggaaactccttttgaactcattgaa
gctctgcttaagtacattgaaaccctcaatgttcctggagctgttttggtttttttacct
ggctggaatttgatttatactatgcaaaagcatttggaaatgaatccacattttggaaca
cacaggtatcaaattctacctctgcattctcagatacctcgagaggaacagcgcaaagta
tttgatcctgtaccagttggtgtaaccaaggttattttgtccacaaatattgctgagaca
agcattactataaatgatgttgtttatgtcattgattcctgcaagcaaaaagtgaaactg
ttcactgctcacaataatatgaccaactatgctacagtatgggcatccaaaacaaatctt
gagcagcggaaaggccgagctggacgcgtacggcctggattctgttttcacctctgtagc
cgagctagatttgagagacttgaaacacacatgacaccagagatgtttcgaacaccattg
catgaaattgctttgagcataaaacttctgcgtctaggaggaattggccaattcctggcc
aaggcaattgaacctccacctttggatgctgtgattgaagccgagcacactcttagagaa
cttgatgccttggatgtcaatgatgagttgactcctttgggacgaatcctggctaagctc
cccattgagccccgatttggcaaaatgatgataatggggtgtattttctatgtgggtgat
gctgtctgtaccatctctgctgctacctgctttcctgagcctttcattagtgagggaaag
cgcctggggtatatccatcggaattttgctggaaatagattttctgatcatgtggccctt
ttatcagtgtttcaagcctgggatgatgcgagaatgagtggagaagaagcagagatacgt
ttttgtgaacataaacgtctcaatatggctacactgagaatgacttgggaagccaaagtt
cagcttaaagagatcctgattaattctggatttccagaagattgtttgttgacacaagtg
tttactaacactggaccagataataatttggatgttgttatctctctcctggcttttggc
gtgtaccctaatgtatgctatcataaggaaaagagaaagattcttactaccgaagggcgt
aatgcacttatccacaagtcatctgttaattgtccatttagcagccaagacatgaagtac
ccttctcccttctttgtatttggtgaaaagattcgaacccgagccatctctgctaaaggc
atgaccttagtcacccccttgcagttgcttctctttgcttccaagagagtccaatctgat
gggcaaattgtgtttgtagatgactggatcagactacaaatatcccatgaagccgctgcc
tgtatcactgccctcagagcagcaatggaagctctggttgttgaagtaagcaaacaacct
aatatcatcagccagttggaccctgtaaatgaacatatgcttaacatgattcgccaaatc
tctaggccatcagctgctggtataaaccttatgattggcagtgcacggtatggagatggt
ccacgacctcccaagatggcccgatatgataatggcagtggatatagaaggggagtttct
ggatatggtggtggaggctatggcactggaggctatggtggtggctataacagtggaggt
tttggtgggggaggctatggaggtggtggtggtggtggcggcggcggcggaggcggaggc
tatggaggtggcggtggttatggtggtggctccaactcttatcgagggggatatggtgga
ggtggtggtggtggtggaggaggttacagaggaggtttccgaggaggttataggggaaac
tttggtggagactacagaggatctggtggagactacagaggatccgggggagactataga
ggatctgggggagactacagaggatgtggtggtggagattatagaggatctggagggggc
taccgaggatctgggggattccatcgaggtagggggggctatggtggtggctactttgga
cagggaagaggaggtggtggttattaa
DBGET
integrated database retrieval system
