Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101970575
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Entry
101970575 CDS
T10664
Symbol
Slit1
Name
(RefSeq) slit homolog 1 protein
KO
K06838
slit 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
101970575 (Slit1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101970575 (Slit1)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Axon guidance molecules
101970575 (Slit1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRRNT
LRR_1
LRRCT
EGF_TEN
hEGF
LRR_9
LRR_14
EGF_DL_JAG
LRR_EndoS
EGF_3
JAG1-like_EGF2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101970575
NCBI-ProteinID:
XP_005335333
LinkDB
All DBs
Position
Unknown
AA seq
1525 aa
AA seq
DB search
SAGLVRPELWLLLWAAAWRLGTTACPALCTCTGTTVDCHGTGLQAIPKNIPRNTERLELN
GNNITRIHKNDFAGLKQLRVLQLMENQVVAVERGAFDDMKELERLRLNRNQLHTLPELLF
QNNQALSRLDLSENALQAIPRKAFRGATDLKNLQLDKNHISCIEEGAFRALRGLEVLTLN
NNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLR
GLNVAEVQKSEFSCSGQGEAGRVPSCTLSSGSCPAMCACSNGIVDCRGKGLTAIPANLPE
TMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEMAPDAFQGLRSLNSLVLYGNKI
TDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLAKGTFTSLR
AIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRLANKRIGQIKSKKFRCSA
KEQYFIPGTEDYQLNSECSSDVACPHKCRCEASVVECASLKLSKIPERIPQSTAELRLNN
NEISILEATGMFKKLTHLKKINLSNNKVSEIEDGAFEGAASVSELHLTANQLESIRSGMF
RGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNQITTISPGAFDTLQALSTLNLL
ANPFNCNCQLAWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCDEGQEEGGCL
PRPQCPQECACLDTVVRCSNKHLRALPKGIPKNVTELYLDGNQFTLVPGQLSAFKYLQLV
DLSNNKISTLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDVSTLPE
GIFADVTSLSHLAIGANPLYCDCHLRWLSSWVKTGYKEPGIARCAGPSDMEGKLLLTTPA
KKFECQGPPTLAVQAKCDPCLSSPCQNQGTCHNDPLEVYRCACPGGYKGRDCEVSLDSCS
SSPCGNGGTCHAQEGQDGGFTCTCPIGFEGPTCEVNTDDCVEHACANGGVCVDGVGNYTC
RCPLQYTGRACEQLVDFCSPDLNPCQHEAQCVGTPDGPRCECAPGYAGDNCSENQDDCRD
HRCQNGAQCVDEVNSYACLCAEGYSGQLCEIPPHPPAPRNPCEGTECQNGANCVDQGSRP
VCQCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQNWPRANITLQVSTAEDNGILLYNGDN
DHIAVELYQGHVRVSYDPGSYPSSAIYSAETINDGQFHTVELVTFDQMVNLSIDGGSPMT
MDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTSFHGCIRNLYINNELQDFTKT
QMKPGVVPGCEPCRKLYCLHGICQPSASPGPVCHCEAGWGGLHCDQPAEGPCHGHKCVHG
ECVPLDALSYSCQCQDGYSGALCNQVGAAAEPCGGLQCLHGHCQASATKGAHCVCDPGFA
GKLCEQESECRGDPVRDFHRVQRGYAICQTTRPLSWVECRGTCLGQGCCRGLRLKRRKLT
FECSDGTSFAEEVEKPTKCGCALCA
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
tcggcggggctggtccggcccgagctctggctgctgctgtgggcagccgcgtggcgcctg
ggtaccacggcttgccccgccctctgcacctgcactggcaccacggtggactgccacggc
acggggctgcaggccattcccaagaacatcccacgaaacacggagcgcctggaactcaac
ggcaacaacatcacccggatccacaagaatgactttgcggggctcaagcagctccgggtg
ttgcagctgatggagaaccaggtcgtggcggtggagcgaggggctttcgacgacatgaag
gaactggagcggctacgactgaaccggaaccagctgcacacattgccagaactgctgttc
cagaataaccaggcgctgtcccgactggacctgagcgagaacgccctgcaggccatcccc
aggaaggctttccgcggagccacagacctcaagaatctacagctggacaagaaccacatc
agctgcatcgaggaaggggccttccgggccctgcgggggctggaggtgctgaccctgaac
aacaacaacatcaccaccattcccgtgtccagcttcaatcacatgcccaagctgcggacc
ttccgcctgcactccaaccacctgttctgtgactgccacctggcctggctctcgcagtgg
ctgaggcagcggccgaccatcgggctcttcacccagtgctcgggccccgccagcctgcgt
ggcctcaacgtggccgaggtccagaagagtgagttcagctgctcaggccagggggaggcg
gggcgcgtcccctcttgcaccctctcctccggctcctgccccgccatgtgcgcctgcagc
aatggcatcgtggactgtcgtggcaaaggcctcacggccatccccgccaacctgccggag
accatgaccgagatccgtctggagctcaatggcatcaaatccatccccccgggagccttc
tctccctacagaaagctgcgcaggatagacctgagcaacaaccagatcgcggagatggcg
cccgacgccttccagggcctccgctccttgaactcgctggtcctctatggaaacaagatc
acagacctgccccgcggcgtgtttggaggcctgtacaccctacagctcctgctcctgaac
gccaacaagatcaactgcatccggcccgacgccttccaggacctgcagaacctctcgctg
ctctccctgtacgacaacaagatccagagcctggccaagggcaccttcacctccctgcgg
gccatccagacactgcatctggcccagaaccccttcatctgtgactgtaacctcaagtgg
ctggcggacttcctgcgcacgaatcccatcgagacgagcggagcccgttgcgccagcccc
cggcgcctcgccaacaagcgcatcgggcagatcaagagcaagaagttccggtgctcagcc
aaagaacagtacttcattccaggcacggaggattaccagctgaacagcgagtgcagcagt
gatgtcgcctgtccccacaagtgccgctgcgaggccagcgtggtggagtgcgccagcttg
aagctctccaagatcccagagcgcatcccccagtccacggctgagctacgattgaacaac
aatgaaatttccatcctggaggccactgggatgtttaaaaaacttactcatctgaagaaa
ataaacctgagcaacaacaaggtgtccgaaatcgaagatggggccttcgagggcgcagcc
tccgtgagcgagctgcacctgaccgccaaccagctggagtccatccgcagcggcatgttc
cggggtctggatggcttgcggacgctgatgctgaggaacaaccgcatcagctgcatccac
aacgacagcttcacgggcctgcgcaacgtccggctgctctcgctctatgacaaccagatc
accaccatctcccccggagccttcgacaccctccaggccctttccacgctaaacctcctg
gccaaccccttcaactgtaactgccagctggcctggctgggcgactggctgcgcaagagg
aagatcgtgacagggaacccgcgatgccagaacccagacttcctgcggcagatccccctg
caggacgtggccttccccgacttcaggtgtgacgaaggccaagaggaggggggctgcctg
ccccgcccgcagtgcccccaggagtgcgcctgcctggacactgtggtccggtgcagcaac
aaacacctccgggctctgcccaagggcatccccaagaatgtcacagaactctatttggat
gggaaccagttcacactggttccgggacagctgtctgccttcaagtacctgcagctcgtg
gacctgagtaataacaagatcagtaccttaagcaattcctccttcaccaacatgagccag
ctgaccactctgatcctcagctacaatgccctccagtgcatccctcctctggccttccag
gggctccgctccctgcgcctgctgtccctccacggcaatgatgtttccaccctcccagag
ggcatctttgcagacgtgacctccctgtctcatctggccattggagccaaccccctgtac
tgtgactgccacctccgttggctgtccagctgggtaaagactggctacaaagaaccaggc
attgcccgctgcgctgggccctcagacatggagggcaagctgctgctcaccacgcctgcc
aagaagtttgaatgccaaggtcctcctactctagctgtccaagccaagtgtgatccctgc
ttgtccagtccatgccagaaccagggcacctgccacaatgatcccctggaggtgtacagg
tgtgcctgccctggtggctataagggccgagactgtgaggtatccctggacagctgttcc
agcagcccttgtggcaatggagggacgtgccatgcccaggagggccaggatggtggcttc
acgtgcacctgtcccatcggctttgaaggaccaacctgtgaggtgaacacggatgactgt
gtggagcatgcctgtgccaatggaggcgtctgtgtggatggtgtgggcaactacacctgc
cggtgccccctgcagtacacgggaagggcctgtgagcagctggtggacttctgctccccg
gatctgaacccatgtcagcatgaggcccagtgtgtgggcaccccagatgggcccaggtgt
gagtgtgcaccaggttacgcgggtgacaactgcagtgagaatcaggacgactgcagggat
catcgctgccagaatggggctcagtgcgtggacgaggtcaacagctatgcctgcctctgt
gccgagggctacagcggacagctctgtgagatccccccacacccacctgcccccaggaac
ccctgtgaggggactgagtgccagaatggggccaactgtgtggaccagggcagccggcct
gtgtgccagtgcctcccaggcttcggtggccctgagtgtgagaagttgctcagtgtcaac
tttgtggatcgggacacttatctgcagttcactgacctgcagaactggccacgggctaat
atcacactacaggtctccactgcagaggacaatgggattctgctgtacaatggagacaac
gaccacatcgcagttgagctgtaccagggccacgtgcgtgtcagctatgacccaggcagc
taccccagttctgctatctacagtgctgagacgatcaatgacgggcagttccacactgtt
gagctggtcacctttgaccagatggtgaatctctccatcgatggtggcagtcccatgacc
atggacaactttggcaaacactacacgctcaacagcgaggcccctctttacgtgggaggg
atgcccgtggacgtgaactcagctgccttccgcctgtggcagatcctcaatggcaccagc
ttccatggttgtattcgaaacctgtacatcaacaatgagctgcaggacttcaccaagacg
cagatgaaaccaggcgtggtgccgggctgcgaaccctgccgcaagctctactgcctgcat
ggcatctgccagcccagtgccagcccggggcctgtgtgccactgtgaggctggctggggg
ggcctgcactgcgaccagccagctgagggcccctgccatgggcacaagtgtgtccatggg
gaatgtgtgcccctcgatgccctttcctacagctgccagtgccaggatgggtactcaggg
gctctgtgcaaccaggtcggggcggctgcagagccctgtgggggcctgcagtgcctgcat
ggccactgccaggcctcggccaccaagggagcacactgtgtttgtgaccctggctttgcg
ggcaagctgtgtgagcaagagtccgaatgccggggggaccctgtgcgggactttcaccgg
gtccagaggggctatgccatctgccagaccacgcgcccactgtcgtgggtggagtgccgg
ggcacgtgcctgggccagggctgctgcaggggcctgcggctgaagcggaggaagctcacc
ttcgagtgcagcgatgggacctcttttgctgaggaggtggagaagcccaccaagtgtggc
tgtgccctctgcgcgtag
DBGET
integrated database retrieval system
