KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101970595
Entry
101970595         CDS       T10664                                 
Name
(RefSeq) LOW QUALITY PROTEIN: HLA class II histocompatibility antigen, DQ alpha 2 chain-like
  KO
K06752  MHC class II antigen
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04145  Phagosome
iti04514  Cell adhesion molecules
iti04612  Antigen processing and presentation
iti04640  Hematopoietic cell lineage
iti04658  Th1 and Th2 cell differentiation
iti04659  Th17 cell differentiation
iti04672  Intestinal immune network for IgA production
iti04940  Type I diabetes mellitus
iti05140  Leishmaniasis
iti05145  Toxoplasmosis
iti05150  Staphylococcus aureus infection
iti05152  Tuberculosis
iti05164  Influenza A
iti05166  Human T-cell leukemia virus 1 infection
iti05168  Herpes simplex virus 1 infection
iti05169  Epstein-Barr virus infection
iti05310  Asthma
iti05320  Autoimmune thyroid disease
iti05321  Inflammatory bowel disease
iti05322  Systemic lupus erythematosus
iti05323  Rheumatoid arthritis
iti05330  Allograft rejection
iti05332  Graft-versus-host disease
iti05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:iti00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    101970595
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    101970595
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    101970595
   04612 Antigen processing and presentation
    101970595
   04658 Th1 and Th2 cell differentiation
    101970595
   04659 Th17 cell differentiation
    101970595
   04672 Intestinal immune network for IgA production
    101970595
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    101970595
   05164 Influenza A
    101970595
   05168 Herpes simplex virus 1 infection
    101970595
   05169 Epstein-Barr virus infection
    101970595
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    101970595
   05152 Tuberculosis
    101970595
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    101970595
   05140 Leishmaniasis
    101970595
  09163 Immune disease
   05310 Asthma
    101970595
   05322 Systemic lupus erythematosus
    101970595
   05323 Rheumatoid arthritis
    101970595
   05320 Autoimmune thyroid disease
    101970595
   05321 Inflammatory bowel disease
    101970595
   05330 Allograft rejection
    101970595
   05332 Graft-versus-host disease
    101970595
  09166 Cardiovascular disease
   05416 Viral myocarditis
    101970595
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    101970595
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:iti04147]
    101970595
Exosome [BR:iti04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   101970595
  Exosomal proteins of epithelial cells
   101970595
  Exosomal proteins of breast milk
   101970595
SSDB
Motif
Pfam: MHC_II_alpha C1-set
Other DBs
NCBI-GeneID: 101970595
NCBI-ProteinID: XP_013220059
LinkDB
Position
Unknown
AA seq 258 aa
MKKALILGALTLLAIVSPCGGENIVADHVGTYGRNIYQTYGDYGQFTYEFDGDELFYVDL
EKKETVWRQPEFSNFATFEIQXGLRNLVVVKKKNLDTLIKDSNFTPATNEIPEVAVFPKS
PVNLGIPNTLLCLVDNIFPPVINITWFCNDPLVPEGIAETTFYPKSDHSFLKFSYLTFVP
STEDFYDFKVEHWGLEEPLLKHWELELPTPKSELTETVVCALGLTLGLMDVVIGTILIIQ
VLHSRGTSSHQRTTCVIT
NT seq 777 nt   +upstreamnt  +downstreamnt
atgaagaaagctctgatcctgggggccctcaccctgctggccatcgtgagcccctgtgga
ggtgaaaacatagtggctgaccatgttggcacttatggcagaaatatctaccagacatat
ggtgactatggccaatttacatatgaatttgatggagatgagctgttctacgtagacttg
gaaaaaaaggagactgtgtggaggcagcctgagtttagcaattttgcaacatttgaaatt
cagnaaggcctgagaaaccttgttgtggtaaaaaaaaaaaatctggacactttgattaaa
gattccaactttacacctgccaccaatgaaatccctgaagtggctgtgttccccaaatct
cctgtgaaccttggcattcccaacaccctcctctgtctagtggataacatctttcctcct
gtgatcaatatcacttggttttgcaatgatcctttagttccagaaggtattgctgagacc
accttctatcccaagagtgaccattccttcctcaagttcagttacctcacttttgtcccc
tccactgaggatttctatgacttcaaggtggaacactggggcctagaagagccgctcctc
aagcactgggaacttgagcttccaacccctaagtcagagctaacagagactgtggtctgt
gccctggggttgactcttggactcatggatgttgtgataggcaccatcctcatcatccaa
gtcctgcattcccgtggaacctccagccaccaaaggaccacatgtgtgataacctag

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