KEGG   Ipomoea triloba (trilobed morning glory): 116001111
Entry
116001111         CDS       T07384                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    116001111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:itr03021]
    116001111
Enzymes [BR:itr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     116001111
Transcription machinery [BR:itr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     116001111
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 Aa-Ago_N Glyco_transf_28
Other DBs
NCBI-GeneID: 116001111
NCBI-ProteinID: XP_031096868
LinkDB
Position
13:6485607..6494068
AA seq 1458 aa
MGVLLFDEKKNIRGGGDWFYDGIENGVFNWFSIEEDMQPLQAGVLKAISFGFLSEADAAK
ISVKQVGAANEVVDPALGLPNPTFKCNTCGAQDGKRLVAPGGLSTSSNGKHALCCEGHFG
LINLQYTVLNPYLMPEIAQLLNKICPGCKSVRLNRVKVRNYRLGNCKYCDVKIKSYPPMK
FKVSRRDKFRRTALTAEVNEKVSKKFGLASDYWNIIPYDAQTESFDTSDESLKPNMRLLT
HAQVYSILKEIDSEILEASFKRKNSMFLNCLPLTPNCHRIMESGHNMLFDQCSRLYKKLI
DFKGTANDLSVRVLDCTKISKLRIEKKPSTAESLSGSASASGLKFVKELIIGKRTNHTFR
MVVVGDPMINLWDIGVPRHVAEGLQIGEQLNRWNSEKLSEVCHLVILQNGRMTVQRNGEL
VCITASAKLRTGDIVYRPLVDGDIVLINRPPSIHQHSLIALFVKILPVDSVVSINPLICS
PLRGDFDGDCLHGYVPQSMDSRVELRELVALKKQLTDGQSGQNLLALSHDSLTAAHLIME
DGVLLNRFQMQQLQMLCPHLLQLPDIIKPMPVGSFSWTGKELFSMLLPSDFDYDFPSNGV
HISQGEIISSNGSSWLGSTDGNLFDSLVKHYGEEAIEFLNTAQEVLCEWLSMRGLSVSLS
DIYLSDPDSHENMLDDISCGLQEAERLSHISQLMEDYNRDFLIGCSEGNENCINFEIEQQ
KSVARSQASIFASKREFRNIQTLFYSYASKENSLLAMLKAGSKGNLLKAVQHSMCLGLQC
ASALLSFQIPYNLSCVGWNDDKFHPHNIPEYSGSYIPCAVVKNSFLAGLNPLECFVHSLA
TRESNFGGHADVSGTLTRTLMFFMRDIYTGYDGTVRNAYGNHIVQFSYHTEHPDHAQEDH
FAPNIMAGHPVGSLAACAISEAAYSALDQPISILESSPLLNLKKVLESGVQKRSGGKTAS
LFLSQNLGRWAFGFEYGALGVKSHLERVLFSDIVSTVMIWFSPEKCRDKRSSPWICHFHV
NKRIAKKRGLKLQSITNALNRHYTATKVKANSQLPNLKITCEDCYLAGLLEEDSKFCITA
SIVGVSKSSSDCDILRDVVIPFLLGTVVKGFPAFKKVDILWKDGSFASKSSKKSSGELYL
RVFMSENCARTKFWSELVNSCLQIMEMIDWERSHPDDIQDTSVAYGIDVAWISFLSGLNS
AISEIGKRIVPEHLVLTADYLTSTGEFTALNSKGLADQRKANGLYAPFSQACLKSPGEAF
VKAAKMETVDDLRGSAEALILGKTPPIGTGFHFDILYSGKGYEPLSKSTDVYSLLSMNSS
LRRQNGMVNPKGNNESPMKSLPQHLSKAFSFDDIKKLSLALKNILSSYRINEPLRDSDKS
IVMKALYFHPKREEKIGMGAEEIKVGQHEKHQSRCFIVERSDGTSVDFSYHKCVQNAIEL
IAPEKAKSFHSRWPERKL
NT seq 4377 nt   +upstreamnt  +downstreamnt
atgggggtgttgcttttcgatgaaaagaagaacataagaggtggcggtgattggttctat
gatgggattgagaatggggtttttaattggttttcgatcgaggaggatatgcaaccactg
caagctggagttttaaaggccattagttttggcttcctctctgaagcagatgctgccaaa
atttcagtcaagcaagtaggagctgcgaatgaagtagtagatcctgctttagggttaccg
aatccaacttttaagtgcaacacgtgtggagcacaggacgggaagcggttagttgctccg
ggaggtttgagtacttcaagcaatggaaaacatgcattgtgttgtgaaggtcactttggt
ttaataaacttacaatacacagttttaaatccgtatctcatgcctgagattgcacagctt
ctcaataaaatttgcccaggatgtaaatctgttcgccttaatagagtcaaggtcaggaat
taccgtttgggaaactgcaagtactgtgatgtaaagataaaaagctatccaccaatgaaa
tttaaagtatctcgaagagacaagtttaggaggactgcacttactgcagaagtgaatgaa
aaggtgtcaaagaaatttggtttagcttctgattattggaacataattccatatgatgca
cagaccgaaagttttgacacatcagatgaaagtctgaaaccaaatatgagacttctaaca
catgcccaggtctatagcatactgaaagaaattgattcagagattcttgaggcatccttc
aagaggaaaaattcgatgttcctgaattgtttacctttgactcctaactgtcaccgaata
atggaatctggccataatatgctatttgatcaatgcagtaggctttataaaaagctgatt
gacttcaaaggtacagccaatgacttaagcgtgcgcgttcttgactgcaccaagatatca
aagctacgtattgaaaagaaaccatcaactgcagaatctctatctggtagtgcatctgct
tctggcctgaagtttgtcaaagagcttattatcggaaagagaacaaaccatacttttcgc
atggttgttgtcggtgatccgatgataaatctctgggacattggtgttccgcgccatgtt
gctgagggcctccagataggcgaacagttgaaccgttggaactctgaaaaattatctgag
gtttgccatctagttattcttcaaaatggaaggatgactgttcagagaaatggtgagctg
gtttgtatcactgcatcggcaaagttgcgaacaggggatattgtttacagacctcttgtt
gatggagatattgtgttaataaacagacctccttcgattcatcaacactctcttattgct
ctgttcgtcaaaatacttcccgtagattcggttgtttctataaatcccctgatttgctct
cctcttcgtggggactttgacggtgattgccttcatggttatgttccccaatcaatggat
tctagagtggagcttagggagcttgttgctttgaagaaacaattgaccgatggacagagc
ggccagaaccttttagcactaagccatgatagcttgactgctgctcatttaataatggag
gatggggttctcttgaaccgtttccaaatgcagcagctacaaatgctttgtcctcatcta
ttgcaattgccagatatcatcaaaccaatgccagtaggatctttttcgtggactggcaaa
gagttatttagcatgcttttgccttcggattttgattatgattttccatctaatggtgtg
catattagccaaggtgaaattatatcttctaatgggtcttcttggcttggtagcactgac
ggaaatctttttgacagtcttgttaaacattatggagaggaagcaattgagttccttaat
actgcacaggaagttctctgcgagtggttatctatgaggggtttaagtgtttcgttatct
gatatttatctttctgatccagacagccatgagaatatgcttgatgatatttcttgtggc
ttacaagaagcggagaggctttcccatatttcacagctaatggaggattataatcgagat
tttcttattgggtgttctgaagggaacgaaaattgtattaattttgaaattgagcagcag
aaatcagttgcacgtagtcaagcttccatatttgcttccaagcgagaatttcggaacatc
caaaccctgttttatagttatgcaagcaaggagaattcattgctggctatgttaaaggcc
gggagcaagggtaacctgctaaaagcagtgcagcatagcatgtgtcttggtttgcagtgt
gcttctgctctattgtcatttcaaatcccctataacctttcttgtgttggatggaatgat
gataaattccatcctcataatattccagagtattctggctcttacatcccatgtgctgtg
gtaaaaaattcttttcttgcggggttaaatcctttggagtgttttgtgcattcattagca
acaagggaaagtaattttggtgggcatgctgatgtttctggaactttgactcgtaccctt
atgtttttcatgcgtgatatatacaccggatatgatggaacagtgagaaatgcatatggg
aatcacattgttcagttttcttaccacacagaacaccccgatcatgcccaagaagaccat
tttgcacctaatattatggctggtcatcctgttggttccttggcagcatgtgctatttct
gaagctgcttacagtgctttggatcagcctatcagcatacttgagtcatcgccgttgctt
aacctaaagaaagtgctggaatcgggagtgcaaaaacgcagcggaggtaaaactgcttcg
ctgttcttgtcacaaaatcttggaagatgggcttttggatttgaatatggagctttagga
gtgaaaagtcatttggaaagggtcctattttcggacattgtttctacagtaatgatctgg
ttttcccctgagaaatgcagagacaagcgcagtagtccatggatttgtcattttcatgtg
aacaagagaattgcaaagaagaggggtttaaagttgcaatccattaccaatgctcttaac
cggcattacacagccactaaagtaaaagcaaatagtcaacttccaaatctgaagattaca
tgcgaggattgttatcttgctggcttgctggaagaagattcaaaattttgcattacagct
tcaattgttggagtttcaaaaagttcttcagattgtgatatcctccgtgatgttgtgatt
ccattcctacttggaacagtcgttaaaggatttcctgcattcaagaaggttgatatctta
tggaaggacggttcctttgcatcaaaatcttcgaaaaaatcttctggagaactttatttg
cgtgttttcatgtccgagaactgtgcgaggactaaattttggagtgaactcgtcaatagc
tgccttcaaataatggaaatgattgattgggaacgcagccatccagatgatattcaggat
acatctgtggcttatggaatagacgttgcatggatatcttttctgagcggtctaaattct
gcaatatctgaaattggcaagaggatcgttcccgaacacttggtcctcaccgcagattat
ctgacatcaacaggagaattcactgctttgaattccaaagggcttgcagatcaaagaaag
gcgaatggtctctatgcacccttttcgcaagcatgtttaaagagccctggcgaggctttt
gttaaagcagcaaagatggaaacggttgatgatcttcgagggagcgctgaagctttgata
ctgggaaagacccctccaattggtaccggtttccacttcgatattttatactctgggaag
gggtatgagccactatccaaatcaactgatgtctatagtctgctgagtatgaattctagt
cttcggaggcaaaatgggatggtcaacccgaaaggaaacaatgaaagcccgatgaagtcc
cttccccaacatctatccaaagccttctcgtttgatgacattaagaagctctccctggca
ctgaaaaatatcttgagcagctatcgcatcaatgagccattgagagactctgacaaatcc
attgtgatgaaagccttatactttcatccaaagcgggaagagaaaattgggatgggagcc
gaagaaataaaggttggccagcacgagaagcaccaatcgcgctgctttattgtggaacga
tcagatggaacatccgtggacttctcctaccacaaatgcgtgcagaatgctattgagcta
atcgctcccgagaaggccaagagtttccattcgagatggccggaaaggaagttgtaa

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