Ipomoea triloba (trilobed morning glory): 116001935
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Entry
116001935 CDS
T07384
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116001935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116001935
Spliceosome [BR:
itr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116001935
Complex C
U5 SnRNP specific factors
116001935
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Ras
SOI
Septin
Peptidase_C58
K1-lyase_C
Motif
Other DBs
NCBI-GeneID:
116001935
NCBI-ProteinID:
XP_031097763
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All DBs
Position
13:1195565..1200740
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AA seq
988 aa
AA seq
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MDDSLYDEFGNYIGPEIESDRDSDREDEDEELPDRDDVDEAASDGERENGASNGWLMSPD
DVDMDNQVVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIIKPVKNLKFELGVKDS
STYVSTQFLLGLMSNPALVRNVALVGHLHHGKTLFMDMLVEQTHHISTFDQNSEKHMRYT
DTRIDEQERKISIKAVPMTLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAVEGVMVNTERAIKHAIQERLPIVVVINKVDRLITELKLPPKDAYFKLRHTIEVINTH
ITAASSTAGNAQFIDPALGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWG
DYYFDSDSRSFKKKQPANGVERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLPN
SAYRLNVRPLLRLACSAVFGSATGFTDMLVRHIPSAKAAAARKVEHIYTGPKDSVIYQAM
EECDPAGPLMVNVTKLYPKSDCSVFDAFGRVYSGEIMTGQTLRVLGEGYSPDDEEDMTIK
EVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNVDYNDDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIENGVV
SIDWPRKKLGDFFQTKYDWDLLAARSIWAFGPDRQGPNILLDDTLSSEVDKSLLNAVKDS
VVQGFQWGAREGPLCDEPIRGVKFKIVDAKIAPEPLHRGTGQIIPTARRVAYSSFLMATP
RLMEPVYYVEIQTPIDCVSAIFQVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCVSAFDHWSIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMMVELAQQDAELHQQMF
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttgtatgatgagttcggtaattatattggaccggagattgagtccgac
cgggatagtgaccgggaggacgaagatgaggagctgcctgacagggacgacgttgacgag
gctgcgtctgatggtgaacgcgaaaatggagcttcgaatgggtggctaatgagcccggat
gatgttgatatggataatcaagttgtgcttgctgaagacaagaagtattatcctactgca
gaagaggtttatggggaagaagttgagacattggtgatggatgaagatgaacagcccctt
gagcaaccgataatcaagcctgttaagaatttgaagtttgaattgggcgtcaaggattcg
tctacttatgtttcgactcagtttcttcttggtctcatgtcgaacccggcactggtacgg
aatgttgctttggttgggcacttgcatcatgggaagacattgtttatggatatgctggtg
gagcaaactcaccacatatctacgtttgaccaaaacagtgagaagcatatgaggtatact
gatacaagaattgatgagcaagaaaggaagatctcaatcaaggctgttccaatgacatta
gtgcttgaagatagtaactccaagtcatacctctgtaacattatggatacccctggtcat
gtcaacttctctgatgaaatgactgctgcacttagacttgctgatggtgcagtcttgatt
gttgatgctgttgaaggagtgatggtaaacactgagagagctataaaacatgcaatccaa
gagcgccttcccatagttgttgtaattaataaggttgacaggctgataactgaactaaaa
ctaccccccaaggatgcctactttaagctgagacatactatcgaagttatcaatacccat
atcactgcagcatcttccacagctggaaatgcccagttcattgatcctgctcttggaaat
gtttgttttgcaagtgccactgctggatggtccttcactctccagtcttttgcaaagctt
tatgtgaagctacatggaataccttttgatgctgacaaatttgcatctcggctttgggga
gactactactttgatagtgatagcagaagtttcaagaagaaacaacctgctaatggtgtt
gaaagatcttttgtgcagtttgtgctcgaacccctttataagatctacagtcaagtaatt
ggagagcataaaaagagcgttgaagcaactttggcagagcttggtgtgacccttccaaat
tcagcttacaggctaaatgttagacccttactgaggcttgcttgtagtgctgtttttggt
agtgccacaggctttactgatatgctggtgcgtcacattccgtctgccaaagcagcagcg
gctaggaaggtcgagcacatatatactggtccaaaggattccgtaatttatcaagcaatg
gaagaatgcgatcctgctggccccttaatggttaatgtgactaaactttatcccaagtca
gattgcagtgtttttgatgcttttggtagggtctatagtggagaaattatgacagggcaa
actctacgtgttctaggagaagggtattcaccagatgatgaggaggatatgaccataaaa
gaagtaacaaagttgtgggtataccaagcccggtacagaatacctataagcaaggctcct
ccaggctcatgggttctgattgaaggtgttgatgcttcaattatgaaaactgcaacactt
tgtaatgttgattataatgacgatgtatacatatttcggcctcttcagttcaatactctt
ccagtggtgaaaacagcaactgagcctttaaatccgagcgaattgcctaaaatggtggag
ggcctcaggaaaatcagcaagagctatcctcttgcaatcaccaaggttgaagagtctgga
gagcacacaattttgggtactggagagctgtacctagattccataatgaaggaccttaga
gagctatattctgaagtggaagtgaaggtagctgatccagttgtctccttttgcgaaaca
gtggtggagtcttcttcaatgaagtgctttgctgaaactcctaataagaaaaacaaaatc
actatgattgctgagccactggagaaaggacttgctgaggacattgagaatggtgttgtg
agtatagattggccgcgaaagaaacttggtgacttttttcagacaaagtatgactgggat
ctgcttgctgcacgatctatttgggcatttggacctgataggcagggacctaacattttg
ctggatgataccctttcaagtgaagttgacaagagtttattaaatgctgttaaggattct
gttgtacaagggtttcagtggggtgctcgagaaggacccctttgtgatgagcccatcaga
ggtgtcaaattcaaaatagttgatgcaaagattgcacctgagccattgcaccgtggaaca
ggccagatcatcccaaccgcaagacgggtggcttactcatccttccttatggctacccca
aggcttatggaacctgtatattatgtggagatacagacacctatagactgtgtttctgct
attttccaagtgttgtcacgcaggcgtggacatgttacagcagatgttcctcaaccagga
actcctgcctacattgtgaaggcatttttacctgttattgaatcatttggttttgagacg
gacctgaggtaccacacacaagggcaggcattctgcgtctccgcttttgatcattggagt
attgttcctggggatcctctggataagagcattgttcttcgtccacttgagcctgctcca
attcaacaccttgctcgtgaattcatggtgaagacaaggcgtagaaagggaatgagcgag
gacgtatccatcaacaagttcttcgatgaggccatgatggtagaactagcacagcaggat
gctgagcttcatcaacaaatgttttaa
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