Ipomoea triloba (trilobed morning glory): 116010195
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Entry
116010195 CDS
T07384
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
116010195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116010195
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
116010195
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
116010195
NCBI-ProteinID:
XP_031105342
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Position
2:12625907..12633370
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AA seq
859 aa
AA seq
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MGIPAFYRWLLERYPRSVEPAVEETPATVNGVTVPIDTTGPNPNGYEFDNLYLDMNGIVH
PCFHPEGLPPPKTYDDVFMAVFKYLDRIFSIIRPRKLLFMAIDGVAPRAKMNQQRARRFR
AAKDAADAADAASGIENLRGIHESKGADSSDTKRLDSNVITPGTEFMAMLSSALQYYVQT
RMNEDPGWKGIKVILSDASVPGEGEHKIVSYIRLQRNLHGFDPNTRHCLYGLDADLIMLA
LATHEVHFTVLREDVRKAHSKDRGPKHLKHVQVAECGKELENFISQQKFQLLRIWVLRDY
LAYDLQIPDSAVKIDLERLIDDFVFMCLFVGNDFLPHMPSLEISEGAIDLLMNVYKKEFV
QMGGYLTNSFEVNLKRVEHFIQAVGSCENRIFKKRIQARKEWERPMRHHSTKSGPKGNQT
KSHANFKTALEDDKVKLGEEGWKDRYYAEKFGVESVEDCDRVRRDTVLKYAEGICWVMHY
YYQGVCSWQWFYPYHYAPFASDFHGFDQLEITFTLGKPFKPFDQLMGVLPAASAQALPLS
YRELMTDPLSPILDFYPPDFELDINGKRHSWQAVCKLPFIEEFRLLSEIGKVENTLTDEE
KKRNSLGLDMLFIHGSHPLGGKIFSFCERNKDNPKLTQTKVKRKINPKFSHGMNGYMYIS
DKPVCPIEIPSPIDGMDMIRDNKVICVFYKVPSFHPHITRLPEGVILPGKAIKKHDIKPP
PMLWHEKTAITTGRVTVRPMPPKSISGSCLARLAHRLVSENLIVPRQGNGVNMALQAPLS
NPTCPDDENLDECRKRKRKAEKRKAQHERKRQRLKQLEDAIADPSQKSSIGPAVYACNNA
PEQCTMILGNISGDISTCA
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgggtatacctgcgttttatcgatggctgctcgaacgataccctcgttccgttgagccg
gcagtggaagaaactccggctacggtcaatggcgttaccgtcccaattgacactaccgga
ccaaatcctaacggttatgaatttgataacttgtatctcgatatgaatgggattgtacac
ccttgttttcatcctgaaggcttgcctcctccgaagacctacgatgatgtgttcatggcg
gtattcaagtatcttgatagaatcttttcaatcattaggccccggaagcttttattcatg
gcgattgatggagttgcaccgcgtgctaaaatgaatcaacagcgagcaaggcgttttaga
gctgctaaagatgcagctgatgcagctgatgcagcttctggaatagagaatctgagaggg
atacatgaatcaaaaggggcagattcatcagatactaaaagactagattctaatgtaatc
actcctggaactgaattcatggctatgctgtcatctgcactacaatactatgtacagacc
agaatgaatgaggacccaggctggaaaggaatcaaggttattctctctgatgctagtgta
cctggtgaaggagagcacaagattgtttcttacatccgcttgcaaaggaatcttcatggt
tttgatcctaacacacggcattgcttgtatggattggatgcagatctgattatgcttgca
cttgccacccacgaagttcacttcacggttctaagagaagatgttcgcaaagcacactcc
aaggatagaggtccaaaacatttgaaacatgtccaagttgcagagtgtggcaaggagtta
gaaaattttatatcacaacagaagtttcagcttctcagaatatgggttctcagggactat
ctagcttatgatttacaaataccagattcagcagttaaaatagacctggaacgactgata
gatgatttcgtttttatgtgtttatttgttggaaatgattttttaccacacatgccttca
ttggagatatcagagggggccattgacttgctcatgaatgtctacaagaaggaatttgtc
caaatgggtggttaccttactaattcatttgaggttaatttgaaaagggtggagcatttc
atacaagctgttggttcatgtgaaaataggatctttaaaaagcgcatacaggcaagaaaa
gaatgggagaggccaatgagacatcattcaactaaatcaggtcctaaagggaatcaaact
aaaagccatgcaaatttcaagactgctttggaagatgacaaggttaaattaggggaagag
ggctggaaagacagatattatgcagaaaaatttggggttgaatctgttgaagactgtgat
agggttcgtagggatacggttttgaaatatgctgaagggatatgttgggtgatgcattat
tactaccaaggagtctgctcctggcaatggttttatccttatcactatgctccgtttgca
tctgattttcatggttttgatcaattagaaataactttcacactaggcaagcccttcaag
ccttttgatcagttgatgggtgtccttccagctgcaagtgcacaagcactccctctttcg
tacagggagttgatgacagatccactatcccccattttggacttctatcctcctgatttt
gagcttgacatcaatggaaaaaggcattcatggcaggctgtgtgtaagttaccatttatt
gaggaattccgtcttctctcagagataggaaaagttgagaatacattgacggatgaagaa
aagaagagaaacagccttggacttgatatgctatttattcatggatcacatcctttaggt
ggaaagatcttttcattctgtgaacggaataaagataatccaaagctgacacagacaaaa
gtgaagcggaaaatcaacccaaaattcagccatggaatgaatgggtacatgtatatttct
gataaacccgtgtgtcctatagagataccttcaccaattgatggcatggatatgataaga
gacaacaaagtaatatgtgtattttataaagtcccttcttttcatcctcatattaccaga
ctgcctgaaggagtaatattgcctggaaaggctatcaaaaagcatgacatcaagccacct
ccaatgctgtggcatgagaagactgccatcaccacagggagagtcaccgtaaggcctatg
cctcccaagtctatatcgggatcttgtttggcgaggctagctcatcggcttgtttcggaa
aatcttattgtgccgcgacaaggaaacggggttaacatggcattgcaagcacctttgtca
aacccgacatgtcctgacgatgaaaaccttgacgaatgcaggaagaggaagcgtaaggct
gaaaaaagaaaggctcagcatgaacgcaagagacagagacttaaacaactggaggatgcc
attgctgacccttcacaaaagagttccattggaccggcagtgtatgcttgcaataacgct
cccgagcaatgtacaatgattttaggaaatatctctggggatatatcaacctgcgcgtaa
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