Ipomoea triloba (trilobed morning glory): 116012567
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Entry
116012567 CDS
T07384
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
itr03036
]
116012567
03400 DNA repair and recombination proteins [BR:
itr03400
]
116012567
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
116012567
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
116012567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
Motif
Other DBs
NCBI-GeneID:
116012567
NCBI-ProteinID:
XP_031107995
LinkDB
All DBs
Position
3:complement(22481676..22503804)
Genome browser
AA seq
1620 aa
AA seq
DB search
MDLRTPPNRVRKRPLSDVYSEPPKKRISDEDGGASGGYKKQVYSEMAKRKQHQAVMEDED
TSGVQKGQTFSFRVLLPNGTTLEMKIREPGRDMSVDQLVEAIRAEYCALKCRTESHRRQI
NWKSQNLYILDPFDRKLKGLYFRKLNPRKSYLLRLQDGSVEAERFENMWDLTPDTDLLKE
LPEEYSFESALADLIDNSLQAVWSNDENERRLISVKLFKNKITIFDSGPGMDGDAETSIA
KWGKMGASLHRSSKGKAIGCKPPYLKPYFGMFGYGGPIASMHLGRRATVSSKTKASKKVY
ILHLEREDLLSCSSSEKTWRTSGGLRDPSDYEIRESPHGSFTKVEIFEPKMRCQGIKKLQ
GKLKDIYFPYIQCDEISETGQTTMATEFQVNETNLAEVLGGEVAITNIFSCNGPDFTLQL
HFTLDSCSIQGIGHQEANARLKCVYFPVTQGKESIERIIENLKDEGYENLQNFESFSRVT
VRRLGRLLPDAHWPRLPFMEPKQRKGETHKRCCFRVKCFVDTDSGFNPTPAKTNLAHCNP
FTIALKNFGNKTPEKDVHVEIYKDGKELSFSQLDKQYHEWISKMHEKYDLEIESGDDQPT
LVLGYENRKELGTSSDVLRVHKNFKRNGVTWKSGQRIKILKGACAGFHRTNTFATLEFII
LEGWEGDVGGDARIICRPLEVPTEDGCQLSFDKGSANLDLRGSKSLPFSVIVSKKCIPVN
DAEWESQLQKHHHETTPSSIEVLDANHSLDLDVSEMLPADIVDAGHNPPEEILAIVRPAS
FNSAVASMKLDQKYILKESFEMSLSIKFSASDGNDKNASHVYSNRIKPSLHKGLIGVYIF
PLRSKLPELFHKAGVYSFLLSLKKPSCATYEKKVRVQALSEAVSWGLSSENSIKYRTRVG
APLPCINIACYDRYMNRIPFKPIPDVVIKFHSESDGFSYDHAMDTYTSQDKFSLRIKGLL
IETSELDKIGPNYETTLSICSEDELFSVAIPVQVLPGPLHHISVHPLNYGQKLLPGLVVK
ELKLEMLDEYNNHIQKDEEIKLQMDGFCAYDQGCLMCKVDENGFINLGGVLKVTAGYGKK
ASLSVFSCDKAVFKQEFQIEARELRIASEIPEDCVPGSHLENIIFEVINSEGEVDESIHD
DEKNGQPHTLTIKSELLKIDETVRYSFCHGRCTVRSITLPEDEGKFHFVAVHSRHMELQL
CIEVNTKKAVEPDSGYFQSQSPEMQILNEEVENFQYQCAQKQIFSYENSSPYKVPKLEHD
ESEADRKKLEDELCHYAQLSSQCETDLQILESKQSNIQTEIFNLEESLGLYSSPNCCCTQ
ESIWEKISGRGDSAAAIACKLIEKPSSVELHHEFSKEILGVVALLGFAESYELSRVLAEY
LGEKQMLAVVCNAHASSAGASKMHGKHGHLCSADALSTLANNLGTSINGGYDMICLNDIR
PYTGELSIDPQRMLAMVKPALPNGESPPGFLGYAVNMIHISAKHLQFRTASGHGLRETLF
YRLLGELQVYANRDCMSMASSCSNKHPAVSLDGVIMRGNGVTTHVFGDPFIMFPVISNEQ
QINLMTVNPDVLNLLNSKKIQLREVQYQIENERIAYEEINKKLSGFRVAYLNLTQGSSSV
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atggacttaagaactcctccaaatagagtccgcaaaaggcctttgtcagatgtttactct
gaaccgcccaaaaagaggattagcgatgaagatggaggtgcgagtggtggttataaaaaa
caagtttactcagaaatggcgaaaaggaagcaacatcaggctgtcatggaggatgaagat
acgagcggtgttcagaaaggtcaaacatttagttttcgagttcttctgccaaacggcacc
acattggagatgaaaatacgtgaaccgggtcgtgatatgtccgttgatcagcttgtggaa
gctatacgggcagagtactgtgccttgaagtgcagaacagagtcgcacaggaggcagatt
aattggaaaagccagaacttgtatattttggatccttttgacaggaagcttaagggcttg
tatttcaggaagttgaatccgagaaaatcctatttgttaaggcttcaggatggctcagtt
gaagcagaaagatttgagaatatgtgggatcttactccagatactgacttgttaaaagag
ttgcctgaagaatactcatttgaatctgcccttgctgacttaattgataattcattgcaa
gctgtatggtctaatgatgaaaatgagaggagattaatcagtgtgaagttgttcaagaac
aagattacaatatttgattcaggccctggaatggatggggatgctgaaacttctatagcg
aagtggggaaagatgggggcatctctacaccggtcatcaaaaggaaaggccataggatgc
aaacctccttaccttaagccttattttgggatgtttgggtatggagggcctattgcatct
atgcatttgggaaggcgagctactgtttcctcaaagacaaaagcatcaaagaaagtgtat
atattacatctagagagagaggatttactcagctgttcctcttctgaaaagacttggagg
actagtggtggtcttagagacccctcggattatgaaattcgagaatcaccccatggaagt
tttaccaaagttgagatttttgaaccaaaaatgaggtgtcaaggaataaagaaactacaa
ggcaaattgaaagacatttactttccttacattcagtgtgatgaaatatctgaaacagga
caaacgacaatggctactgaatttcaggtcaatgaaactaatttggctgaagtcttgggt
ggagaagtggctattacaaacatattctcttgtaatggtccagacttcacattgcaactg
catttcactttagattcctgttcaatacaaggaataggacatcaagaagcaaatgctcgc
cttaagtgtgtttattttccagttactcagggtaaagaaagcattgaaaggataattgag
aacttaaaggacgaaggttatgagaacctacagaactttgaaagttttagccgtgttact
gtccgacgcttgggtcgcctgcttccagatgctcactggccccggcttccatttatggaa
cccaaacaaagaaaaggagaaacccataaaagatgctgctttagagtaaaatgttttgta
gatactgattctggtttcaacccaacgccagcaaagacaaatttagcgcattgcaatcct
tttaccattgcactaaagaactttggcaacaaaacccctgagaaagatgtacatgttgaa
atttacaaggatggaaaagagttgtctttttcacaactagacaagcaatatcatgaatgg
atctctaagatgcatgaaaaatatgatttggaaattgaatcaggcgacgatcaacctacc
cttgtactaggctatgagaacagaaaagagcttggtacatcatctgatgttttgagggtt
cataaaaatttcaagaggaatggggttacctggaaatcaggacagagaatcaaaattctg
aagggagcatgtgcaggctttcaccggacaaacacttttgccactctagagtttattatc
cttgaaggatgggagggtgatgttggtggcgatgctaggattatctgcaggccactggaa
gtccccactgaggatggttgccaactttcttttgataaaggaagtgctaacttagatcta
cgtgggtctaaatctttaccatttagtgtcattgtttccaagaagtgtataccagttaat
gatgctgagtgggaatcccagcttcagaaacaccatcatgaaaccaccccatcgtcaatt
gaagtattggatgccaatcattctctagacttagatgttagtgagatgttacctgctgat
atagttgatgctggacataatcctccagaagaaatccttgccattgttcgtcctgcttca
ttcaattctgctgtggcttctatgaaattggaccagaagtacatacttaaagaaagtttt
gaaatgagtctgagcataaaattttctgcttcagatggaaatgacaaaaatgccagtcat
gtttattcaaatcgaataaaaccatcattgcataaagggttgattggggtttacatattc
ccattgagaagtaagttgccggagctatttcacaaagctggagtatattcttttctactt
tcacttaaaaaaccttcttgtgcaacttatgaaaaaaaagtgcgtgtacaagctttgtct
gaggcagtgagttggggactttcaagtgaaaacagcataaagtatagaacacgggttggt
gcacctcttccatgtatcaatattgcctgttatgatagatacatgaaccgcataccgttc
aaacctattcctgatgttgtaatcaagtttcattctgaaagtgatggtttctcttacgac
catgctatggatacatatacatcacaagataaattttctttacgtattaagggcctcctt
attgaaaccagtgaactagacaagattggaccaaactatgaaactactttgtctatatgt
tcagaggacgaattattttctgtagccattccagttcaagttcttcctgggccactgcac
catatcagtgttcatccactaaattatggacagaaattgttacctggacttgtggttaag
gagcttaaattggagatgttggatgaatataataatcatatccaaaaagatgaggaaatc
aaactgcagatggatggattctgtgcttatgatcaaggttgtcttatgtgtaaggtagat
gaaaatggttttataaaccttggtggagtactgaaagttacagcaggatatggtaaaaaa
gcttccctctctgttttttcttgtgataaagcagttttcaaacaagaatttcaaattgag
gcaagagagctgcgaattgcatcagagatacctgaagattgtgttcctggttctcatttg
gagaacatcatcttcgaggtcataaattctgaaggagaggttgatgaaagtatccatgat
gatgaaaagaatggtcagccccacactcttactataaaatctgagttgttgaagatagat
gagactgtcagatacagcttctgtcatggtcgctgcactgttcgtagcatcactctccca
gaagatgaagggaagtttcattttgtagcagttcattcccgtcacatggagttgcagttg
tgtatagaggtgaatacaaaaaaagctgtagaaccagactctggatatttccaatctcaa
agtccagagatgcagatattaaatgaagaggttgaaaatttccaatatcaatgtgcacag
aagcagatcttttcatatgagaattcatctccctacaaagttccaaaattggagcatgat
gaaagcgaagctgatcgtaagaagttggaggatgaactttgccattatgctcaactcagt
agtcagtgtgaaaccgacctgcaaattcttgagtccaagcaatcaaacattcagactgaa
attttcaacttggaagagtctcttggactttattcttcgccgaattgttgctgcactcaa
gaatcaatttgggagaagattagtgggaggggtgactcagcagctgccattgcctgcaaa
ctgattgaaaaaccttcatctgtagagctacatcatgaattttccaaagagatactaggt
gtggttgcactacttggatttgctgaaagctatgagcttagcagggttttagcagagtac
cttggtgagaaacaaatgctggctgtggtttgcaatgcccatgcatcatctgctggtgcc
tcaaaaatgcatgggaagcatgggcacttgtgcagtgcagatgctcttagtacattggct
aataatcttggaacctctattaatggaggatatgatatgatatgcctcaatgatataagg
ccttacacaggtgagttgagcattgatccccaaagaatgctagcaatggtgaagcctgct
ttaccaaatggggagagccctccagggtttttgggctatgctgtcaatatgatccacata
tctgcaaaacatttgcaattcagaactgcctcgggtcatggtcttcgtgagactctattt
tatcgtcttctgggagagctccaagtctatgcaaacagagattgcatgagcatggctagt
tcctgctctaacaaacaccccgctgtttctttggatggtgtcatcatgagaggaaatggt
gtcacaacccacgtatttggggatccattcattatgtttccagtcatctcaaatgagcag
cagataaatctgatgacagtgaatccagatgtcctaaatctgctcaactctaagaagata
caactcagggaggttcaatatcaaattgaaaacgaaagaatagcatatgaggaaatcaat
aaaaaattatccggttttcgtgttgcatatttgaacttaacccagggaagtagtagtgtg
taa
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