Ipomoea triloba (trilobed morning glory): 116013537
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Entry
116013537 CDS
T07384
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
116013537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116013537
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
116013537
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
116013537
NCBI-ProteinID:
XP_031109210
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Position
3:complement(24090924..24097418)
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AA seq
900 aa
AA seq
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MGIPAFYRWLLERYPRSVEPAMEETPAVVNGVTVPIDTTGPNPNGYEFDNLYLDMNGIVH
PCFHPEGLPPPKTYDDVFMAVFKYLDRIFSIIRPRKLLFMAIDGVAPRAKMNQQRARRFR
AAKDAADVASGTENLRGIHESKGEDSSDTKILDSNVITPGTEFMAMLSSALQYYVQTRMN
EDPGWKGIKVILSDASVPGEGEHKIISYIRLQRNLHGFDPNTRHCLYGLDADLIMLALAT
HEVHFTVLREDVRKAHSKDRGPKLVKHVRVAKCGKELEKFISQQKFQLLRIWVLRDYLAY
DLQIPDSAVKIDLERLIDDFVFMCLFVGNDFLPHMPSLEISEGAIDLLMNVYKKEFVQMG
GYLTNSVEVNLKRVEHFIQAVGSCENRIFKKRIQARKEWERPMRHHSTKSDTKGNQTKSH
ANFKTALEDDKVKLGEEGWKDRYYAEKFGVESVEDCDRVRRDTVLKYAEGICWVMHYYYQ
GVCSWQWFYPYHYAPFASDFHGFDQLDITFTLGKPFKPFDQLMGVLPAASAQALPLSYRK
LMTDPLSPILDFYPPDFELDINGKRHSWQAVCKLPFIEESRLLSEIAKVENTLTDEEKKR
NSLGLDMLFVHGSHPLGGKIFSFCERNKDNPKLTQTKVKRKINPKFSHGMNGYMYISDNP
VCPIEIPSPINGMDMIRENNVICVFYKVPSFHPHITRLPEGVILPGKAIKKHDIKPPPML
WHEKTAITTGRVTVRPMPPKSISGSCLARLAHRLVLENLIVKGQGNGVNMALQAPLSDQT
CPDDENLDKCSRKRKRNAEKRKAQHEQGNGVNMALQAPLSNQTCPDDENLDKFSRKRKRN
AEKRKAQHERKRQKLKQLEDAIADPSQKSSIGPAVYACNNAPEQCTAISGKISGEISTCA
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggtatacctgcgttctatcgatggctgctcgaacggtaccctcgttccgttgagccg
gcaatggaagaaactccggcggtcgtcaacggcgttaccgtcccaattgacactaccgga
ccaaatcctaatggatacgaatttgataacttgtatctcgatatgaatgggattgtacac
ccttgttttcatcctgaaggcttgcctcctccgaagacctacgatgatgtgttcatggca
gtattcaagtatcttgatagaatcttttcaatcattaggccccggaagcttttattcatg
gcgattgatggagttgcaccgcgtgctaaaatgaaccaacagcgagcaagacgttttaga
gctgctaaagatgcagctgatgtagcttctggaacagagaatctgagagggatacatgaa
tcaaaaggggaagattcatcagatactaaaatactggattctaatgtaatcactcctgga
actgaattcatggctatgctgtcgtctgcactacaatactatgtacagacaagaatgaat
gaggacccaggctggaaaggaatcaaggttattctctctgatgctagtgtacctggtgaa
ggagagcacaagattatttcttacatccgcttgcaaaggaatctgcatggatttgatcct
aacacacggcattgcttgtatggattggatgcagatctgattatgcttgcacttgccacc
cacgaagttcacttcacggttctaagagaagatgttcgcaaagcacactccaaggataga
ggtccaaaactcgtgaaacatgtccgagttgcaaaatgtggcaaggagttagaaaaattt
atatcacaacagaagtttcagcttctcagaatatgggttctcagggactatctagcttat
gatttacaaataccagattcagcagttaaaatagacctggaacgactgatagatgatttc
gtttttatgtgtttatttgttggaaatgattttctaccacacatgccttcattggagata
tcagagggggccattgacttgctcatgaatgtctacaagaaggaatttgtccaaatgggt
ggttaccttactaattctgttgaggttaatttgaaaagggtggagcatttcatacaagct
gttggttcatgtgaaaataggatctttaaaaagcgcatacaggcaagaaaagaatgggag
aggccaatgagacatcattcaactaaatcagatactaaagggaatcaaactaaaagccat
gcaaatttcaagactgctttggaagatgacaaggttaaattaggggaagagggctggaaa
gacagatattatgcagaaaaatttggggttgaatctgttgaagactgtgatagggttcgt
agggatacggttttgaaatatgctgaagggatatgttgggtgatgcattattactaccaa
ggagtctgctcctggcaatggttttatccttaccactatgctccctttgcatctgatttt
catggttttgatcaattagacataactttcacactaggcaagcccttcaagccttttgat
cagttgatgggtgtccttccagctgcaagtgcacaagcactccctctttcgtacaggaag
ttgatgacagatccattatcccccattttggacttctatcctcctgattttgagcttgac
atcaatggaaaaaggcattcatggcaggctgtgtgtaagttaccatttattgaggaatcc
cgtcttctctcagagatagcaaaagttgagaatacattgacggatgaagaaaagaagaga
aacagccttggacttgatatgctatttgttcatggatcacatcctttaggtggaaagatt
ttttcattctgtgaacggaataaagataatccaaagttgacacagacaaaagtgaagagg
aaaatcaacccaaaattcagccatggaatgaatgggtacatgtatatttctgataaccct
gtgtgtcctatagagataccttcaccaatcaatggcatggatatgataagagagaacaac
gtaatatgtgtattttataaagtcccttcttttcatcctcatattaccagactgcctgaa
ggagtaatattgcctggaaaggctatcaaaaagcatgacatcaagccgcctccaatgctg
tggcatgagaagactgccattaccacagggagagtcaccgtaaggcctatgcctcccaag
tctatatcgggatcttgtttggcgaggttagctcatcggcttgttttggaaaatcttatt
gtgaagggacaaggaaatggggttaacatggcattgcaagcacctttgtcagaccagaca
tgtcctgacgatgaaaaccttgataaatgcagcaggaagaggaagcgtaatgctgaaaaa
agaaaggctcagcatgaacaaggaaatggggttaacatggcattgcaagcacctttgtca
aaccagacatgtcctgacgatgaaaaccttgataaattcagcaggaagaggaagcgtaat
gctgaaaaaagaaaggctcagcacgaacgcaagagacagaaacttaaacaactggaggat
gccattgctgacccttcacaaaagagttccattggaccggcagtgtatgcttgcaataat
gctcccgagcaatgtacagcgatttcaggaaaaatctctggggagatatcaacctgtgcg
taa
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