Ipomoea triloba (trilobed morning glory): 116014760
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Entry
116014760 CDS
T07384
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116014760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116014760
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116014760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
ORC-CDC6-like
nSTAND3
AAA_29
NACHT
AAA_28
AAA
SMC_N
AAA_23
AAA_15
AAA_22
AAA_5
AAA_18
AAA_30
Zeta_toxin
AAA_16
SRP54
PduV-EutP
AAA_33
FtsK_SpoIIIE
AAA_25
AAA_7
AAA_14
AAA_24
Arf
DUF3584
AAA_13
Motif
Other DBs
NCBI-GeneID:
116014760
NCBI-ProteinID:
XP_031110568
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Position
4:30216064..30219199
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AA seq
286 aa
AA seq
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MAAESKSIQVSGMQFGYDFQTPLFFDFSLKASPGSRCLLVGANGSGKTTLLRILAGKHMV
GGKDVVRVLNFSAFHDTHLVCSGDLAYLGESWSKNAGSAGEIPLQGDFSAEHMIFGVDGV
DPIRREKLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEVTVDLDVVARMD
LLDFFKEECEQRGATVVYATHIFDGLETWATDLVYVQDGVLKRSEKLSELAELKTKPNLL
SVVETWLRSETPIEKKKASNNPSAVKTSSPFDASPFRSTRHMAYYR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaatcaaagagtatacaagtgagtggcatgcaattcgggtacgatttccaa
acgcccttgttcttcgacttcagcctcaaggcttctcccggatctcgatgtctgctcgtc
ggcgccaatggatccgggaagacgactctgctcagaattttggcggggaagcatatggtg
ggtgggaaagatgttgtgcgggtgctaaatttttcagctttccatgacacacaccttgtc
tgcagtggtgacctagcttatcttggagaatcttggagcaaaaatgctggctctgctggg
gaaatcccactccagggagacttctcagctgagcatatgatatttggagttgatggagtt
gatcctattaggcgagagaagctgattgaactgctagatattgatctccaatggcggatg
cacaaggtctctgatggtcagcggcgtagagtgcagatctgtatgggccttcttcatccc
tacaaggttcttttgctagatgaggttacagttgacctagatgttgttgcaaggatggat
ttacttgatttttttaaggaagaatgcgagcagagaggtgctacggtagtgtatgcaacg
catatatttgatggattagagacatgggcgacagatctagtctacgttcaagatggtgtt
ttgaagaggtctgagaagttatcagaacttgccgagctgaagactaaacccaatttgctc
tcggtggtggagacctggcttcggtctgagaccccgattgagaaaaagaaagccagcaat
aatccaagtgcagttaagacatcttccccgtttgatgcttctccctttcgctcgactaga
cacatggcgtattatcgctga
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