Ipomoea triloba (trilobed morning glory): 116022954
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Entry
116022954 CDS
T07384
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116022954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116022954
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116022954
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_23
AAA_29
AAA_15
Zeta_toxin
AAA
Arf
AAA_28
Motif
Other DBs
NCBI-GeneID:
116022954
NCBI-ProteinID:
XP_031119737
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All DBs
Position
6:18216617..18222165
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AA seq
328 aa
AA seq
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MAVKEERKPSVEISKLKFTYPGIDGHPPPGSTPLIDDFSLTLFPGDRYLLVGSNGAGKTT
ILKILGGKHMVEPDMVRVLGRSAFHDTALTASGDLCYLGGEWRREVAFAGFEVPIQMDVS
AQKMIFGVAGVDPQRRDELIKVLGIDLSWRLHKASDGQRRRVQICMGLLKPFTVLLLDEI
TVDLDVLARADLLRFLKKECEDRGATIIYATHIFDGLEDWPSHIVYVAHGRLQLAMPMDK
VKEISNLSLMRTVESWLRKERDEERKQRKERKAKGLPEYEKQIEGSRVVGDPAHAAVRVL
NNGWAGGRLNSTIAGEENFVLSSNRVLR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaaggaagagaggaagccgtcagtggagatcagcaagttgaaatttacctat
ccgggaatcgacggtcatccgccgcctggatccactccactcatcgatgatttctcacta
actctatttcccggcgaccgctatcttctcgtcggatctaatggcgcagggaagacgact
attctcaagattttgggagggaagcatatggtggaaccagatatggttagagtgttagga
cgctcagcatttcatgacacggctttgacggcttcgggcgacctctgctaccttggggga
gagtggaggagagaagttgcttttgctgggtttgaggtgcctattcaaatggatgtctct
gctcagaaaatgatatttggggttgcaggtgtcgatccccaaagacgagatgaattaatt
aaggtattgggtattgatctgtcttggagactgcacaaagcgtctgatggtcaaaggagg
agggtacaaatttgtatgggtcttttgaaaccattcacggtcctcctccttgatgagatt
actgttgacctagatgtgcttgcaagggcggaccttttaagatttctgaagaaagaatgt
gaagaccgaggagcaacaataatttatgccacacacatctttgacggtcttgaagattgg
ccttctcatattgtttatgtggcacatggaaggttgcaactagctatgccaatggacaag
gttaaggagataagcaacctttcactaatgagaacagtagaaagttggctgaggaaagaa
agggacgaggaaaggaaacagaggaaagagaggaaggcaaaggggctcccggagtatgaa
aaacaaattgaaggcagtcgtgtggtcggggatccagctcacgctgctgttcgtgtatta
aacaatggttgggctggtggaaggctaaattctaccattgccggtgaggaaaattttgtc
cttagctcaaaccgtgtcttgaggtag
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