KEGG   Ipomoea triloba (trilobed morning glory): 116022954
Entry
116022954         CDS       T07384                                 
Name
(RefSeq) ABC transporter I family member 20
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116022954
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:itr03019]
    116022954
Messenger RNA biogenesis [BR:itr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     116022954
SSDB
Motif
Pfam: ABC_tran AAA_21 AAA_23 AAA_29 AAA_15 Zeta_toxin AAA Arf AAA_28
Other DBs
NCBI-GeneID: 116022954
NCBI-ProteinID: XP_031119737
LinkDB
Position
6:18216617..18222165
AA seq 328 aa
MAVKEERKPSVEISKLKFTYPGIDGHPPPGSTPLIDDFSLTLFPGDRYLLVGSNGAGKTT
ILKILGGKHMVEPDMVRVLGRSAFHDTALTASGDLCYLGGEWRREVAFAGFEVPIQMDVS
AQKMIFGVAGVDPQRRDELIKVLGIDLSWRLHKASDGQRRRVQICMGLLKPFTVLLLDEI
TVDLDVLARADLLRFLKKECEDRGATIIYATHIFDGLEDWPSHIVYVAHGRLQLAMPMDK
VKEISNLSLMRTVESWLRKERDEERKQRKERKAKGLPEYEKQIEGSRVVGDPAHAAVRVL
NNGWAGGRLNSTIAGEENFVLSSNRVLR
NT seq 987 nt   +upstreamnt  +downstreamnt
atggcggtgaaggaagagaggaagccgtcagtggagatcagcaagttgaaatttacctat
ccgggaatcgacggtcatccgccgcctggatccactccactcatcgatgatttctcacta
actctatttcccggcgaccgctatcttctcgtcggatctaatggcgcagggaagacgact
attctcaagattttgggagggaagcatatggtggaaccagatatggttagagtgttagga
cgctcagcatttcatgacacggctttgacggcttcgggcgacctctgctaccttggggga
gagtggaggagagaagttgcttttgctgggtttgaggtgcctattcaaatggatgtctct
gctcagaaaatgatatttggggttgcaggtgtcgatccccaaagacgagatgaattaatt
aaggtattgggtattgatctgtcttggagactgcacaaagcgtctgatggtcaaaggagg
agggtacaaatttgtatgggtcttttgaaaccattcacggtcctcctccttgatgagatt
actgttgacctagatgtgcttgcaagggcggaccttttaagatttctgaagaaagaatgt
gaagaccgaggagcaacaataatttatgccacacacatctttgacggtcttgaagattgg
ccttctcatattgtttatgtggcacatggaaggttgcaactagctatgccaatggacaag
gttaaggagataagcaacctttcactaatgagaacagtagaaagttggctgaggaaagaa
agggacgaggaaaggaaacagaggaaagagaggaaggcaaaggggctcccggagtatgaa
aaacaaattgaaggcagtcgtgtggtcggggatccagctcacgctgctgttcgtgtatta
aacaatggttgggctggtggaaggctaaattctaccattgccggtgaggaaaattttgtc
cttagctcaaaccgtgtcttgaggtag

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