Ipomoea triloba (trilobed morning glory): 116029308
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Entry
116029308 CDS
T07384
Name
(RefSeq) DNA repair protein RAD16 isoform X1
KO
K15083
DNA repair protein RAD16
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
itr03400
]
116029308
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
116029308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-C3HC4
zf-RING_5
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
ResIII
zf-C3HC4_4
zf-RING_2
DEAD
Prok-RING_4
zf_RING_Vps8_fungal
DUF1922
Motif
Other DBs
NCBI-GeneID:
116029308
NCBI-ProteinID:
XP_031127107
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All DBs
Position
9:4752822..4760076
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AA seq
929 aa
AA seq
DB search
MKRRYKRSRPRKKAAEKGAQRVEFSDDDNHFVVSSDSDYHTSEDDDIIDISEENEMGGFP
FNHLVNDEVGVSDDDLLYKVPKRRRKVGSTRRGIEMDTGFKEEKPQNEEVVDGSKFGVGG
PHTTSPDFIALINRINERKKKRIKKRKDRPILMWEVWDDENDQWLVENFTTDVEIDNRNE
VMSETAEAPSELIMPLLRYQKEWLAWALKQEESASKGGILADEMGMGKTVQAIALVLAKR
ELKRAIGEHCLPSSSPSTSQGLPAMKGTLVICPVVAVGQWVSEIERFTLKGSNKVLVYHG
KNREKCLDRLSEYDFVITTYSIVEFDYRKYVMPPKQRCEWCGKALYEKKMAQHRKYYCGP
DATRTAKQSKQQKKKPKYGVKLSMEKTESNEGKAQQNNGSEGNPKKKGRKKGVKSYTIDN
ECSNDGPFENIANEEQVISGKSILHSVKWDRIILDEAHYIKERRSNTTKAILALESSYKW
ALSGTPLQNRVGELYSLVRFLQIIPYSYYFCKDCDCRALDYCSSTECPHCPHKSVRHFCW
WNRYIASPIQAEGHYGNGRDAMILLKNKILKSVLLRRTKKGRAADLALPPRIVTLRRDSL
DVKEEDYYTSLYNESQAQFNTYVREGTVSNNYAHIFDLLTRLRQAVDHPYLVEYSVSALA
RSENAVDATNVGQPCGICHDSVEEPVVTSCAHTFCRTCLEEFSSGMAKVSCPTCSKPLTT
GLLNGSGNRDSKNRTTIKGFRASSILNRIVLDEFQTSTKIDALREEIRFMVERDGSAKGI
VFSQFTEFLDLIHYSLIKSGVNCVMLMGSMTMAARESAITKFTDDPECRIFLMSLKAGGV
ALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIDNTIEERILKLQEKK
ELVFEGTIGGCSDALGKLTEGDLKFLFVT
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtcgctataagcgttctcggcctcggaagaaagcagcagaaaagggtgcacag
cgtgtggagttctctgacgatgataatcatttcgtggtttcttcggattctgattatcat
accagtgaagatgatgacattattgatatttcagaagagaatgaaatgggagggtttcct
ttcaaccatcttgtaaatgatgaggttggggtttctgatgatgaccttttgtacaaggtg
ccaaagcggaggaggaaggttggatctacaagaagggggattgaaatggatactggcttt
aaggaagaaaaaccacagaatgaagaggtggtggatgggagtaaatttggtgtaggaggg
cctcatacgactagtcctgacttcattgcactgataaaccggataaacgagaggaagaaa
aaaaggataaagaagagaaaggacagaccgatattaatgtgggaagtgtgggatgatgaa
aatgaccagtggcttgttgagaacttcacaacagatgttgaaatagataatcgaaatgag
gtgatgtctgaaactgctgaggcaccttcagaattgataatgccactgctaagataccaa
aaggagtggttggcatgggcgttgaagcaagaagagtctgcttcgaaagggggcatactt
gctgatgaaatggggatgggcaagactgtgcaagcaatagcacttgtgcttgctaagcgt
gaactcaagagggctattggtgaacattgtttgccatcatcttctcccagtacatctcag
gggcttccagcaatgaaaggcactcttgtaatatgcccggtggttgctgtggggcagtgg
gttagtgagattgagcgtttcaccttgaagggcagcaataaggttctggtttatcatgga
aaaaatagggaaaaatgccttgacagactctctgagtatgactttgttataacaacctat
tccattgttgagtttgattatagaaaatatgtgatgcctccaaagcagagatgcgagtgg
tgtggaaaagctctctatgaaaaaaagatggctcaacaccggaaatactactgtgggcca
gatgctactagaactgctaaacagtcaaagcaacagaaaaagaaaccaaaatatggtgta
aaattgtcaatggagaaaacagaatctaatgaaggcaaggctcagcaaaacaatggttct
gagggtaatccaaagaagaaaggccgtaaaaagggcgttaaaagttacaccattgacaac
gaatgcagcaatgatggtccattcgagaacatagcaaatgaagagcaagtcatttcagga
aaatcaattttgcattctgtgaaatgggatcgcataattttggatgaggcccattatata
aaagaaagacgctctaacactacaaaagctattcttgctttggagtcttcctacaagtgg
gccttgagtggcaccccccttcagaatcgtgttggagagttgtactcacttgtccggttc
cttcaaatcattccgtattcttactacttttgtaaagattgtgattgtagagcacttgat
tattgttcctcaactgaatgcccacattgccctcacaaatctgtgcgacacttttgttgg
tggaatcgttatattgcttcaccaatacaagctgaaggacattatgggaatggtagagat
gctatgattttgctgaaaaacaaaattctgaaaagtgttctgcttagacgtactaaaaag
ggcagggctgctgatcttgcacttcccccaaggattgtgacactgagacgggattctctt
gatgtcaaagaagaagattactatacatctttatataatgagagtcaagctcaatttaat
acatatgtccgggaaggaactgtgtcgaataactacgcccacatttttgacctcctcaca
cgcctgcgacaggcggttgatcacccttaccttgtcgaatactctgtctctgctttggca
agaagtgaaaatgccgtagatgctaccaatgttggacaaccttgtggcatatgtcatgac
tcagtagaagaacctgtggttacatcatgtgcacacaccttttgcagaacttgtttggag
gagttttcttctggtatggcaaaagtttcatgccctacgtgctccaagccactcacaaca
ggcctattaaatggtagtggtaatagagattcgaaaaacagaacaacaatcaaaggattt
agggcctcgagtatactgaacagaattgtgcttgatgaattccagactagtactaaaata
gatgccttgagggaagaaattagatttatggttgaaagagatggttctgctaaaggaata
gttttcagccaattcacagaatttttggatttgatacactattctcttatcaagtcgggc
gttaattgtgttatgttaatgggatcaatgactatggccgctagagaatctgctattact
aaattcactgacgatccagaatgcagaatatttcttatgagtttgaaagctggaggtgtt
gctttaaatctgactgtagcatcacatgttttcttgatggatccttggtggaatccagcg
gtggagaggcaagcacaagatagaatccatcggataggacaatataaacctataaggatt
gtgagatttgtgattgacaacaccattgaagaaagaatcttgaagctgcaagagaagaag
gaattagtttttgaagggacgattggtggatgctcagacgcacttggaaagctaacggag
ggagacttgaaattcctctttgtcacttga
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