Ipomoea triloba (trilobed morning glory): 116032087
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Entry
116032087 CDS
T07384
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
116032087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116032087
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
116032087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
116032087
NCBI-ProteinID:
XP_031130349
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All DBs
Position
10:25909..51944
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AA seq
988 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIADVVEEEPREGENRAPLPIDVSRPNPNGMEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSIFEYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDATEAEAEEERLRKEFEMEANLLSLEKPETSDSNVITPGTPFMAVLSVALQYYIQS
RLNSNAGWRFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTQHCLYGLDADLIMLS
LATHEVHFSILREVITPPGQQEKCFACGQPGHFAADCRGVDGNGKALNDIPIYKKKYQFL
NIWVLREYLQHDLGISNPPFQIDFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
FIYRSEFTAMGGYLTDAGEVFLDRVEHFIQAVAVHEDQIFRKRARIHQAIENSEGARLRA
RNDSNDEPQPPEVDKVRLGEPGYKERYYSEKFGLSSPVEINEVRQDVVQKFVEGLCWVCR
YYYQGVCSWQWFYPYHYAPFASDLKGLADLEITFFRGEPFKPFDQLMGVLPAASSSALPE
KYRRLMTDPSSPIIDFYPTDFELDMNGKRFAWQAVVKLPFIDEKKLLAETKRLEDTLTQE
EQLRNSVMFDLLYVHPIHALAPYILAYYRHNGSTPPKEQVPWLIDASTSGGMNGFLWLSE
RNGLRNVVPSPIHGLDDIVNNKILNITLLNPPPHKHIPKPPEGVIMPKKILRHIDVKPFP
ALWHEDHGYRRQLGKDRPPVAGAIAGPSLGEAAHRLLKNTLNIGHGGNSGASDSRNFTGS
NVQIKPRACGAFGREGGFYDQSSYRNSAANHVGYRPRPAVQSGRFHDDPSYSYGNNNYTP
RSAMGIPRYAPSSPYEFQGNRQNFKGQDRFVHQQSHSIRGGMSALTIEGGGRTRQNTAIS
PSPRVPNSVQLSNIQPPAPPFVNSVNVGPLPSPPPRWITKPVSVSGGGMYSSKQQEGSKA
AGHEKQVKMVYQVKNRPAQSLPDAGSGQ
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcctgcattttatagatggctggcagatcggtacccgctgtcgattgctgac
gtggtagaggaagagccaagggagggtgagaaccgggcgcctttgccaatagatgtgtct
aggccgaaccctaacggtatggagttcgataacttgtatctggacatgaatgggattatt
cacccttgttttcacccagaaggcaagcctgcacctgccacttatgatgatgtattcaaa
tcaatatttgagtacattgaccatcttttctcattggttcgtcctagaaagctactttat
atggcaattgatggagtggctcctagagctaaaatgaatcaacaacgtactaggcgtttc
agagctgctaaagacgctactgaggctgaagctgaagaagaaagattgaggaaagaattt
gagatggaggccaacctattgtccctagaaaagccagagacatctgattccaatgttatt
acccctgggactccatttatggcagtgctctcagtggcgcttcagtattacatacagtca
aggttgaatagtaatgctggctggcggtttaccaaggtaattctctctgatgcaaatgtt
cctggtgaaggggagcacaaaatcatgtcctacattcgcttgcagcgtaaccttccaggg
tttgatccaaacactcagcattgcctatatggtctggatgcagatctaataatgttgtct
ctagctactcatgaggtgcatttttctatattgagggaggtgattaccccacctggacag
caggaaaagtgttttgcttgtggacaacctggtcattttgcagctgactgtcgtggcgta
gatggaaatgggaaagctttaaatgacattcctatttacaagaaaaagtatcagttcctc
aatatctgggtgttgcgagaatatttgcaacatgatttgggaatttcgaaccccccattt
caaatagactttgagaggctggtggatgactttgtgttcttatgtttctttgttggcaat
gactttctgccccatatgcccacactggagattcgagagggtgcaatcaatttgctgatg
ttcatttatagaagtgagtttacagcaatgggtggttatctcacagatgcgggtgaggtt
tttctggatagagtggaacattttattcaggcagttgcagttcatgaagaccaaattttt
cggaaacgagctcgtatacatcaggcaatagaaaatagtgaaggggcaaggctaagagca
agaaatgacagtaatgatgagccacagcctcctgaggtggacaaggtgaggcttggggaa
cctggatacaaggaacgatattattctgagaaatttggtttgtcaagtccagtggaaatt
aatgaagttagacaagatgttgttcagaagtttgttgaaggactatgctgggtttgccgg
tattactaccaaggtgtatgctcttggcaatggttttatccatatcattacgctccattt
gcttccgatcttaaagggctagcagacttagaaattacattcttccgtggtgaaccattt
aaaccttttgatcagctgatgggtgtcttgcctgctgcgagttcaagtgctcttcctgaa
aaatacaggagattaatgactgatccatcatccccaataattgacttttatccaactgac
tttgaattagatatgaatgggaagcgcttcgcatggcaggctgttgtgaagttgccattc
attgatgagaagaagttgcttgctgaaacaaaaaggcttgaggatactttgacgcaagaa
gagcaactaaggaacagtgtgatgtttgatttgctatatgtccaccctatacatgctttg
gcaccatatatcctggcttactatcggcataatggttccacgcctccaaaggagcaagtt
ccatggctaattgatgcaagtacaagcggtggaatgaatggattcctttggttatctgaa
agaaatggactgagaaatgtggttccttccccaatccatggattggatgacattgttaac
aataaaattctgaatattaccttgctgaatcctcctcctcataagcatattccaaagcct
cctgaaggagtgattatgcctaagaagattttgagacatattgatgtaaaacccttccct
gcattatggcatgaagatcatggctacaggcgccagcttggcaaagataggccccctgta
gctggggcaatagctggcccttcgttgggagaagctgcacatcgcttgctcaagaacaca
ttgaatattgggcatggaggaaattccggagcatcggactccagaaatttcaccggcagc
aatgtgcaaattaagccaagagcttgtggagcatttgggcgagaagggggattttatgat
caaagtagttatcgaaactcagcagctaatcatgttggttacaggccacgaccagcagta
caatctgggcgttttcatgatgatccttcttactcgtatggtaataataattatacacct
cgcagtgcaatgggcattccaagatatgcaccctcctccccctatgagtttcagggtaat
cggcaaaatttcaaggggcaagatagatttgtacatcaacagtcccacagcatcaggggt
ggaatgtctgccttgacaattgaaggtggtggtagaacaaggcaaaatacagcaatttct
ccttctcccagagtaccaaattcagtacaactgtctaacattcagcccccggcccctcca
tttgtgaacagtgttaatgttggtccacttccatcaccgcctcctaggtggatcactaaa
cctgtatcagtatcgggcggagggatgtactcctcaaagcagcaagagggctcaaaagca
gcagggcatgagaagcaagttaagatggtttatcaggtcaaaaaccgcccagcccagagt
ctgcctgatgcgggatcaggacagtga
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