Isoptericola variabilis: Isova_2210
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Entry
Isova_2210 CDS
T01520
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
iva
Isoptericola variabilis
Pathway
iva03030
DNA replication
iva03410
Base excision repair
iva03420
Nucleotide excision repair
iva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Isova_2210
03410 Base excision repair
Isova_2210
03420 Nucleotide excision repair
Isova_2210
03430 Mismatch repair
Isova_2210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iva03032
]
Isova_2210
03400 DNA repair and recombination proteins [BR:
iva03400
]
Isova_2210
Enzymes [BR:
iva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Isova_2210
DNA replication proteins [BR:
iva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Isova_2210
DNA repair and recombination proteins [BR:
iva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Isova_2210
NER (nucleotide excision repair)
GGR (global genome repair) factors
Isova_2210
MMR (mismatch excision repair)
DNA ligase
Isova_2210
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Isova_2210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AEG44930
UniProt:
F6FQN4
LinkDB
All DBs
Position
complement(2391287..2393746)
Genome browser
AA seq
819 aa
AA seq
DB search
MTETTDPAADPTALDPTALAEAARDETARDEAAARRRWAELVALVEEDQRAYYELDAPKV
SDAEYDARLRELEALEAAHPALVTPESPTQRVGGRAAAGFATVEHLEPMLSLDNVFSVDE
LRAWDARVARDLGVGGGDVGYLSEVKIDGLAIALLYEKGRLVRAATRGDGRTGEDVTQNA
LRIAEIPHRLEGDDLPDVVEVRGEVFIPVSAFERLNELQARLRERAVADARERAGARSAA
SRSFDEERARVAALRRFPPFANPRNAAAGGLRQLLDKKDGLDLEAGVARIEALRLYVHGV
GALQWTEGEHAELERQSDVYTLFGRWGLPVSPHNRVVEGIDGVLEMIDHFGEHRHDIEHE
LDGIVVKVDALADQRRLGSTSRAPRWAIAYKYPPEEVTTRLVAIQVGVGRTGRATPYAVM
EPVTVAGSTVRQATLHNQDVVRAKGVRIGDMVVLRKAGDVIPEILGPVTALADDGHPRED
FVMPAECPECGTPLRPMKEGDVDLRCPNAESCPAQVRGRVEHIGSRGALDIEALGEVTAA
ALTQPDVPETPPLRTEAGLFSLTLEQLLPIEVVVRDAETGLPKVDDDGVARRRAPFRKKV
THSRAARLAAEEAGETLPEFEPSAQAVKLLEELERAKTKDLWRILVSLNIRHVGPVAARA
LADWFGSLDAIRAASRDELAAVEGVGPVIADQIVEWFTVDWHREIVEAWAAAGVRFSTPG
HPGPEAMAARAEEGPSGPLAGLTVVVTGSLEGFSRDGAKEAIVAAGGKAAGSVSKKTDYV
VVGENAGSKETKARDLGLPILDEAQFVRLLEGGPAALEA
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgagacgacggaccccgccgccgacccgaccgcgctcgacccgaccgcgctcgcc
gaggccgcccgagacgagaccgcccgagacgaggccgcggcccggcgccgctgggccgag
ctggtggccctcgtcgaggaggaccagcgcgcgtactacgagctcgacgcgcccaaggtc
tccgacgccgagtacgacgcgcgcctgcgcgagctcgaggcgctcgaggcggcgcacccg
gcgctcgtgacgcccgagtcgccgacgcagcgcgtgggcggccgggccgcggccggcttc
gcgacggtcgagcacctcgagcccatgctgtcgctcgacaacgtcttcagcgtggacgag
ctgcgggcctgggacgcccgcgtcgcgcgggacctcggcgtcgggggcggcgacgtcggg
tacctgtccgaggtgaagatcgacggcctcgccatcgcgctgctgtacgagaagggccgg
ctcgtgcgcgccgcgacgcgcggcgacgggcgcacgggcgaggacgtcacccagaacgcg
ctgcggatcgcggagatcccgcaccgtctcgagggcgacgaccttcctgacgtcgtcgag
gtgcgcggcgaggtcttcatccccgtctcggcgttcgagcggctcaacgagctccaggcc
cggcttcgcgagcgggccgtcgccgacgcgcgggagcgcgccggagcccggtcggcggcg
tcgcgctccttcgacgaggagcgcgcccgcgtcgccgcgctgcgccggttcccgccgttc
gcgaacccgcgcaacgcggccgccggcgggctgcggcagctgctggacaagaaggacggg
ctcgatctcgaggcgggtgtcgcgcgcatcgaggccctgcggctctacgtccatggcgtc
ggcgcgctgcagtggaccgagggcgagcacgccgagctcgagcggcagtcggacgtgtac
acgctgttcgggcggtggggccttcccgtctcgccccacaaccgggtggtcgaggggatc
gacggcgtgctcgagatgatcgaccacttcggcgagcaccggcacgacatcgagcacgag
ctcgacggcatcgtggtcaaggtcgacgcgctggccgaccagcgccgcctcggctcgacc
agccgcgccccccgctgggcgatcgcgtacaagtacccgcccgaggaggtgaccacgcgc
ctggtggccatccaggtcggcgtgggccggacgggtcgcgcgacgccgtacgccgtcatg
gagcccgtcaccgtcgccggctccacggtgcggcaggcgacgctgcacaaccaggacgtg
gtgcgcgccaagggcgtccgcatcggggacatggtcgtgctgcgcaaggccggcgacgtc
atccccgagatcctcggccccgtcaccgccctggccgacgacggccacccccgcgaggac
ttcgtcatgcccgccgagtgccccgagtgcggcacgccgctgcggcccatgaaggagggc
gacgtcgacctgcgctgccccaacgccgagtcctgcccggcgcaggtgcgcggccgcgtc
gagcacatcggctcgcgcggcgcgctcgacatcgaggcgctcggcgaggtcaccgccgcg
gcgctcacgcagcccgacgtgcccgagacgccgccgctgcgcaccgaggcgggcctcttc
tcgctcacgctcgagcagctcctgcccatcgaggtcgtcgtgcgcgacgccgagaccggc
ctgccgaaggtcgacgacgacggcgtggcccgccgtcgggcaccgttccgcaagaaggtc
acccacagcagggcggcgcggctcgcggccgaggaggcgggggagaccctgccggagttc
gagccgtcggcccaggcggtcaagctcctcgaggagctggagcgggccaagaccaaggac
ctgtggcgcatcctcgtctcgctcaacatccgccacgtcgggccggtcgcggcgcgggcg
ctcgcggactggttcggctcgctcgacgcgatccgtgccgcctcgcgcgacgagctcgcc
gcggtcgagggcgtcgggcccgtcatcgccgaccagatcgtcgagtggttcacggtcgac
tggcaccgcgagatcgtcgaggcgtgggcggccgccggggtgcggttctccacgccgggc
caccccggcccggaggccatggccgccagggcggaggaagggccgagcggcccgctcgcc
gggctcaccgtggtcgtcaccgggtcgctcgagggcttcagccgcgacggcgccaaggag
gcgatcgttgccgcgggcggcaaggcggcggggtcggtctcgaagaagaccgactacgtc
gtcgtcggcgagaacgccgggtccaaggagaccaaggcccgcgacctcggcctgccgatc
ctcgacgaggcgcagttcgtgcgcctgctcgagggcggaccggccgcgctcgaggcctga
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