Janthinobacterium sp. HH102: JAB4_027840
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Entry
JAB4_027840 CDS
T08624
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jah
Janthinobacterium sp. HH102
Pathway
jah03030
DNA replication
jah03410
Base excision repair
jah03420
Nucleotide excision repair
jah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JAB4_027840 (ligA)
03410 Base excision repair
JAB4_027840 (ligA)
03420 Nucleotide excision repair
JAB4_027840 (ligA)
03430 Mismatch repair
JAB4_027840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jah03032
]
JAB4_027840 (ligA)
03400 DNA repair and recombination proteins [BR:
jah03400
]
JAB4_027840 (ligA)
Enzymes [BR:
jah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JAB4_027840 (ligA)
DNA replication proteins [BR:
jah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JAB4_027840 (ligA)
DNA repair and recombination proteins [BR:
jah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JAB4_027840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JAB4_027840 (ligA)
MMR (mismatch excision repair)
DNA ligase
JAB4_027840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JAB4_027840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH_5
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
QOU73329
UniProt:
A0A853T119
LinkDB
All DBs
Position
3071644..3073995
Genome browser
AA seq
783 aa
AA seq
DB search
MTDPINQDAAARVLALTAELNRHLHAYHVLDNPTIPDAEYDKLFVELQTLEAAHPDLRTP
DSPTLRVGAAPLPQFEQVTHTVPMLSLNNGFTDDDIINFDRRVREGLDLDGTDVDYAAEV
KFDGLAINLRYERGLFVQAATRGDGATGEDVTANIRTISGIPLRLHGDKIPAVLDVRGEV
MMFKGDFARLNERQREAGQKEFANPRNAAAGSLRQLDSRITAQRKLRFYAYGIGALEGAA
MPVSHSALLDWYETLGIPVSKERKVVQGAQGLLAYYADIGARRPSLPYEIDGVVYKVNAT
EDQQELGFVSRAPRFALAHKFPAEEALTQVLGIDIQVGRTGAMTPVARLAPVSVGGVTVT
NATLHNEDEVLRKDVRVGDTVIVRRAGDVIPEVLSVVLEKRLAPAPLPFKMLEACPVCGS
HVVREEGEAIARCSGGLFCSAQRKEAFRHFAGRRMMDIEGLGERYIDTLVELEYVHGLAD
LYSLTLDKLLEMKLRADERDGSTPETVQQGKIPTKWAENLLAGIEASKRPPLERFLFALG
IRHVGESTAKTLAEWLGSLDYVRRAPAALLRVLPDIGGTVAESIADFFAEEKNQQALQAL
LDAGVTPQGEHAPSAKLRAQLEQTTLLAAIGIPKLTEPRSKQLVERGVTLASLAAQGASF
HAGLPAAVAEALAQWLADEGNVKLLGQLDALRNELLSQLPEMPAAGGKLDGKTFVLTGTL
PNMSRDEAAELIEAAGGKVSGSVSKKTAYVVAGSDAGSKLAKAQELGVAILDEAGLLTLL
AQD
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgactgatccgatcaaccaggacgccgccgctcgcgtcctggcactcacggccgaactc
aaccggcatctgcacgcctaccacgtgctcgacaatcccaccatccccgacgccgagtac
gacaagctgttcgtcgaactgcaaacgctggaagcggcccatcccgacttgcgtacgccc
gattcgcccaccttgcgcgtgggcgcggcgcccctgccgcaattcgagcaagtcacgcac
acggtgccgatgctgtcgctgaacaatggtttcaccgatgacgatatcatcaacttcgac
cgccgcgtgcgcgaaggcctggaccttgatggtacggatgtcgactatgctgccgaagtg
aaattcgacggcctggccatcaacctgcgctatgagcgcggcctgttcgtgcaggcggcc
acgcgcggcgatggcgccacgggcgaggacgtgacggcgaatatccgcaccatttccggc
atcccgctgcgcttgcatggcgacaagattccagccgtgctcgacgtgcgcggcgaagtg
atgatgttcaagggcgattttgcccgcctgaacgaacgccagcgcgaagcggggcagaag
gaattcgccaacccccgcaatgcggcggccggcagcctgcgccagctcgattcgcgcatc
acggcgcagcgcaagctgcgtttctatgcctacggcatcggtgcgctggaaggcgccgcc
atgccggtgtcgcactcggccttgctggactggtacgaaaccctgggcatccccgtgtcc
aaggagcgcaaggtggtgcagggcgcgcagggcttgcttgcctactacgccgatatcggc
gcgcgccggccctccttgccgtatgaaatcgacggcgtcgtctacaaggtgaacgcgacg
gaagaccagcaggagctgggttttgtgtcgcgcgcgccgcgttttgcgctggcgcacaag
ttccccgccgaagaagcgctgacgcaagtgctgggcatcgatatccaggtgggccgcacg
ggcgccatgacgcccgtggcgcgcctggcgcccgtgtccgtgggcggtgtgacggtgacc
aacgccaccttgcacaatgaagacgaagtgctgcgcaaggatgtgcgcgtgggcgatacc
gtcatcgtgcgccgcgccggcgacgtgattccggaagtgctgagcgtggtgctggaaaaa
cgcttggcgccggcgccgctgccgttcaagatgctggaagcgtgccccgtgtgcggctcg
cacgtggtgcgcgaagagggcgaggccatcgcccgctgctcgggcggcctgttctgctcg
gcacagcgcaaggaggctttccgtcatttcgcgggccgccgcatgatggatatcgaaggt
ctgggggaacgttatatcgataccctggtcgaactcgaatacgtgcatggcctggctgac
ctgtacagcctgaccctggataaattgctggaaatgaagctgcgcgccgacgagcgcgac
ggttcgacgccggaaacagtgcaacaaggcaagattcccaccaagtgggcggaaaatctg
ctggcaggcatcgaagcgagcaagcgcccgccgctcgagcgtttcctgtttgcgctgggc
atccgccacgtgggcgaatcgacggccaagaccctggccgagtggttgggcagtctcgat
tatgtgcgccgggcgccggccgccttgctgcgcgtgctgcccgacatcggcggcacagtg
gccgagtcgattgccgatttctttgccgaagaaaagaaccagcaggcgttgcaggcattg
ctggacgctggtgtcacgccgcagggcgaacacgcgcccagcgccaagctgcgcgcgcag
ctcgaacaaaccaccttgctggccgccatcggtattccgaagctgacggagccgcgcagc
aaacagctggtggagcggggcgtgaccctggccagtctggcggcgcagggtgccagcttc
cacgcgggcttgcccgccgccgtggccgaagcgctggcgcaatggctggccgatgagggc
aatgtcaagctgcttggtcaactggacgcgctacgaaatgaattactgtcacaattgcct
gaaatgccagctgctggcggcaaactggacggcaagacctttgttttgacgggcactttg
cccaacatgagccgcgacgaggctgcggagttgatcgaggcggccggcggcaaggtcagc
ggttccgtgtcgaagaaaaccgcttacgtcgtggccggttcggacgccggcagcaagctg
gccaaggcgcaggagctgggtgtggccatactcgacgaggctggtctgctgaccctgttg
gcgcaagactaa
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