Janthinobacterium sp. 17J80-10: EKL02_10835
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Entry
EKL02_10835 CDS
T05896
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jaj
Janthinobacterium sp. 17J80-10
Pathway
jaj03030
DNA replication
jaj03410
Base excision repair
jaj03420
Nucleotide excision repair
jaj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EKL02_10835 (ligA)
03410 Base excision repair
EKL02_10835 (ligA)
03420 Nucleotide excision repair
EKL02_10835 (ligA)
03430 Mismatch repair
EKL02_10835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jaj03032
]
EKL02_10835 (ligA)
03400 DNA repair and recombination proteins [BR:
jaj03400
]
EKL02_10835 (ligA)
Enzymes [BR:
jaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EKL02_10835 (ligA)
DNA replication proteins [BR:
jaj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EKL02_10835 (ligA)
DNA repair and recombination proteins [BR:
jaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EKL02_10835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EKL02_10835 (ligA)
MMR (mismatch excision repair)
DNA ligase
EKL02_10835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EKL02_10835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
QAU34635
UniProt:
A0A410UTD8
LinkDB
All DBs
Position
complement(2431119..2433173)
Genome browser
AA seq
684 aa
AA seq
DB search
MQDELFADVPARAAWLRAELNRHAHAYYVLDNPSIPDAEYDRLFLELSALEQQHPELRSP
DSPTQRVGGAPLPQFEAVRHSVPMLSLGNGFDDDDVVAFDRRVREGLRADGEVDYATELK
FDGLAINLRYENGILVEAATRGDGATGENVTANIRTIRAIPLRLRMENPPTVLDVRGEVL
MFKADFDRLNTRQRDAGQKEFANPRNAAAGSLRQLDSRITSQRALRFYAYGIGVLEGAAL
PDSHAALLDWFDAIGMPVCKERSIVSGAEGLLAFYRDIGARRAALPYEIDGVVYKVNRLA
DQQRLGFVSRAPRFAIAHKFPAQEALTLVQDIGVQVGRTGAITPVARLAPVSVGGVTVTN
ATLHNEDEVRRKDVRIGDTVIVRRAGDVIPEVVAVVPERRPADAREFLMPAVCPVCGSAI
IRAEDEAVARCSGGWTKCAAQKKGGLLHFVSRRAMDIEGLGEQLVEQLVDRHVIATAADL
YKLGFASLAELERMADKSARNVLNALEKSKSTTLARFIYALGIRHVGEATAKELARHFGR
MDSVMDATLEQLLEVADVGPVVAASIQQFFVDPLNRELVEQLRAGGVHWAEHEGIAAAAT
DADKVGSALQGKTFVLTGTLPNLTRDAAAAMIEAAGGKVAGSVSKKTAYVVAGEEAGSKL
VKAAELGIAILDETGLIELLKGIS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgaattgtttgctgacgtgcccgcgcgcgcggcctggctgcgcgcagaactc
aaccggcacgcccatgcctattacgtgctggacaatcccagcattcccgatgcggaatac
gacagactcttcctcgaactgagcgcgctggagcagcagcaccccgagttgcgcagcccc
gattcgcctacccagcgcgtgggcggcgcgccgctgccgcaattcgaggcggtgcggcac
tcggtgccgatgctatcgcttggcaatggcttcgacgatgacgatgtcgtggccttcgac
cgccgcgtgcgcgagggtttgcgcgccgatggcgaagtggactacgccacggagctgaag
ttcgacggcctggcgatcaacttgcgctatgaaaacggcatcctggtagaagccgccacc
cgcggtgatggcgccactggcgaaaacgtcacggcaaatatccgcaccattcgcgcgatc
cctctgcgcctgcgcatggaaaacccgccgacagtgctggatgttcgcggcgaggtgctg
atgttcaaggccgacttcgatcggctcaacacgcgccagcgcgatgccgggcaaaaggaa
ttcgccaatccgcgcaatgctgctgccggcagcctgcgccagctcgattcacggatcacg
tcgcagcgcgcgctgcggttttatgcctatggcatcggcgtgctggaaggcgcggccttg
ccggactcgcatgcagccttgctggactggttcgatgccatcggcatgccggtttgcaag
gaacgttcgatcgtttcgggtgccgagggcttgctggcgttttaccgcgatatcggtgcg
cgccgggctgccctgccgtacgaaatcgatggcgtggtgtacaaggtcaaccggctggct
gaccagcagcgcctcgggttcgtctcgcgtgcgccgcgttttgccatcgcgcacaagttt
cctgcccaggaagccttgactctggtgcaggatatcggcgtgcaggtcggccgtaccggc
gccatcacgccggttgcgcgcctggcgccggtatcggtgggtggcgtcacggtgaccaat
gccaccctgcacaacgaagatgaagtgcggcgcaaggatgtgcgcattggcgacaccgtg
atcgtgcgccgtgccggcgacgtcattccggaagtggttgccgtggtgccggaaaggcgc
ccggcggatgcccgcgaattcctcatgccggccgtttgcccggtgtgcggatcggccatc
attcgcgccgaagacgaggccgtggcgcgctgttccggcggctggaccaagtgcgccgcg
caaaagaagggcggcttgctacacttcgtctcgcgccgcgccatggatatcgaaggcctg
ggtgaacaactggtggagcaactggtggacaggcacgtcatcgccaccgccgccgacctc
tacaagctgggttttgcatcgctggccgaactggagcgcatggcggacaagtcggcgcgt
aatgtcctgaacgccctggaaaaatcaaaatccactacactggcacgattcatttatgca
ttgggcatccggcacgtcggtgaagcaacagcgaaggagctggcgcgccatttcggccgc
atggactctgtcatggatgccaccctggagcaattgctggaggtggcggatgtcgggcca
gtggttgccgcatccatacagcagttttttgtcgatccactgaaccgggaactggtcgaa
caattgcgcgccggcggcgtgcactgggccgaacatgaaggcatcgctgcggcggcgacg
gatgcggacaaggttggcagcgctctgcaaggcaagacatttgtgctgacaggtaccttg
ccgaatctgacgcgcgatgccgccgccgccatgattgaggccgccggcggcaaggtggcc
ggctcggtgtctaaaaaaactgcttatgtggtggccggcgaggaagccggcagcaagctg
gtcaaggctgcagagctgggaatcgccatactggatgaaacaggattgattgaattgttg
aaagggatttcatga
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