Antarcticirhabdus aurantiaca: OXU80_16735
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Entry
OXU80_16735 CDS
T09604
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jav
Antarcticirhabdus aurantiaca
Pathway
jav03030
DNA replication
jav03410
Base excision repair
jav03420
Nucleotide excision repair
jav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OXU80_16735 (ligA)
03410 Base excision repair
OXU80_16735 (ligA)
03420 Nucleotide excision repair
OXU80_16735 (ligA)
03430 Mismatch repair
OXU80_16735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jav03032
]
OXU80_16735 (ligA)
03400 DNA repair and recombination proteins [BR:
jav03400
]
OXU80_16735 (ligA)
Enzymes [BR:
jav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OXU80_16735 (ligA)
DNA replication proteins [BR:
jav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OXU80_16735 (ligA)
DNA repair and recombination proteins [BR:
jav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OXU80_16735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OXU80_16735 (ligA)
MMR (mismatch excision repair)
DNA ligase
OXU80_16735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OXU80_16735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WAJ26518
LinkDB
All DBs
Position
complement(3454278..3456722)
Genome browser
AA seq
814 aa
AA seq
DB search
MDGSKAIEDLTLDEAAAELARLADEMAGHDKRYYEDDAPTVSDAEYDALRQRNAAIEARF
PELARSDSPSAKVGAAPSAKFAKVRHAVPMLSLDNAFSDEDVADWAKRVRRMLKLGEADP
LAITAEPKIDGLSLSLRYEKGRLVTAATRGDGTVGEDVTRNALTLDDIPERLKGEAPDIF
EVRGEVYMAHADFAALNERQAAEGKPVFANPRNAAAGSLRQKDPEITAKRPLRFFAYAWG
GASDLPGDTQTEVVAAIGRFGFPVNDWMGRFDTVEGLIERYHAIEDRRASLGYDIDGVVY
KVDDLSYQADLGFVSRSPRWAIAHKFSAEKAMTTVEAIEINVGRTGKLAPLAKLKPVTVG
GVVVSNVTLHNEDYIAGRDADGGPIREGCDIRIGDTVVIQRAGDVIPQVVDVVLDKRPAQ
AEPYAFPHSCPVCGSLAVRDINPRTGRTDSMRRCTAALTCPAQAKEGLKHFVSRNAFDIE
GLGEVMVEALFDGGVIQQPADIFRLTLDTLKPVVEERQLALRLERERKEDEDLAARGEPP
KARGKRKAYDYTKATQNVLDAIEARRKIAFARLLFALGIPQVGEVAAKDLARRFPDMPAL
REAVSGAAAEEQRSFWNELQGVSFIGETTVSALREGAFDHAGDDAWDPLADPAIKLNTRQ
REALAEAYSEPGALGRRLREAARHPGGAAFDSIAKEAGIGPAATQSLIDFFAEEKNNAAV
DALLAEVGTEKAEAPAGDGPLSDQTVVFTGSLERMTRDEAKAMAEALGAKVAGSVSRSTN
LVVAGPGAGSKLDKAKQYGVEVIDEATWLERAGA
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggacggttcgaaggcgatcgaggatctgaccctggacgaggcggcggcggagctcgcc
cgtctcgccgacgagatggccgggcacgacaagcgctactacgaggacgacgcgccgacg
gtttccgatgccgagtacgatgcgcttcgccagcgcaacgcggcgatcgaggcgcgcttt
cccgagctggcccgcagcgattcgccctcggccaaggttggcgccgccccgtccgcgaag
ttcgccaaggtgcggcacgccgtgccgatgctctccctcgacaacgccttctccgacgag
gacgtcgcggactgggcgaagcgcgtgcggcgcatgctgaagctcggcgaggccgatccg
ctggcgatcaccgccgagcccaagatcgacggcttgtcgctctcgctgcgctacgagaag
gggaggctcgtcaccgccgcgacgcgcggagacggcaccgtgggcgaggacgtgacgcgc
aacgcgctgaccctcgacgacattcccgagcggctgaaaggcgaggcgcccgacatcttc
gaggtgcgcggcgaggtctacatggcccatgccgatttcgcggcgctcaacgagcggcag
gcggcggagggcaagcccgtcttcgccaatccgcgcaacgccgccgccggctcgctgcgc
cagaaggacccggagatcacggccaagcgccccttgcgcttcttcgcctatgcctgggga
ggagccagcgacctgccgggcgacacgcagacggaggtcgtcgcggcgatcggccgcttc
ggctttcccgtcaacgactggatgggccgcttcgacacggtcgaaggcctgatcgagcgc
taccacgccatcgaggatcgccgtgccagcctcggctacgacatcgacggcgtcgtctac
aaggtcgacgacctctcctaccaggccgatctcggcttcgtgtcgcgctcgccgcgctgg
gccatcgctcacaagttctcggccgagaaggcgatgacgaccgtcgaggcgatcgagatc
aatgtcgggcgcaccggcaagctcgccccgctcgccaagctgaagccggtcaccgtcggc
ggcgtcgtggtgtcgaacgtcacgctccacaacgaagactacatcgccgggcgcgacgcc
gatggagggccgatccgcgagggctgcgacatccgcatcggcgacaccgtcgtcatccag
cgcgccggcgacgtcatcccgcaggtggtggacgtcgtcctcgacaagcgcccggcgcag
gccgagccctacgccttcccgcacagctgtcccgtctgcggctcgcttgccgttcgcgac
atcaatccgcgcaccggccgcaccgattccatgcgccgctgcacggcggcgctcacctgt
ccggcgcaggcgaaggaaggcttgaagcacttcgtgtcgcgcaacgccttcgacatcgag
ggcctcggcgaggtcatggtcgaggcgctgttcgacggcggcgtgatccagcagccggcc
gacatcttccgcctgaccctcgataccctgaagcccgtggtcgaggagcgccagctggcg
ctgcgcctggagcgcgagcgcaaggaggacgaggacctcgccgcccgcggcgagccgccc
aaggcgcgcggcaagcgcaaggcctacgactacaccaaggcgacgcagaacgtcctcgac
gcgatcgaggcgcggcgcaagatcgccttcgcccgcctcctcttcgccctcggcattccc
caggtcggcgaggtggcagccaaggatctcgcccggcgcttccccgacatgccggcgctc
cgcgaggccgtctcgggcgcggcggccgaggagcagcgctccttctggaacgagcttcag
ggcgtctccttcatcggcgaaacgacagtctcggccttgcgcgaaggcgccttcgaccat
gccggcgacgacgcttgggatccgctcgccgaccccgcgatcaagctcaacacccgccag
cgcgaggctctcgcggaggcctattccgagcccggcgcgctcggccgccgcctgcgcgag
gcggcccggcatccgggcggggcggccttcgattcgatcgccaaggaggccggcatcggc
cccgcggcgacgcagtcgctgatcgacttcttcgccgaggagaagaacaacgccgccgtc
gacgcgcttctggcggaggtcgggaccgagaaggccgaggcgccggcgggcgacgggccg
ctctcggaccagaccgtcgtcttcaccggctcgctggagcgcatgacgcgggacgaggcg
aaggccatggccgaggcgctgggcgccaaggtcgcgggctcggtgtcgcgctcgacgaac
ctcgtggtcgccggccccggcgcgggctccaagctcgacaaggccaagcagtacggcgtc
gaggtcatcgacgaggcgacctggctggagcgcgccggcgcctga
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