Janibacter sp. YB324: H7A72_04510
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Entry
H7A72_04510 CDS
T08461
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jay
Janibacter sp. YB324
Pathway
jay03030
DNA replication
jay03410
Base excision repair
jay03420
Nucleotide excision repair
jay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7A72_04510 (ligA)
03410 Base excision repair
H7A72_04510 (ligA)
03420 Nucleotide excision repair
H7A72_04510 (ligA)
03430 Mismatch repair
H7A72_04510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jay03032
]
H7A72_04510 (ligA)
03400 DNA repair and recombination proteins [BR:
jay03400
]
H7A72_04510 (ligA)
Enzymes [BR:
jay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H7A72_04510 (ligA)
DNA replication proteins [BR:
jay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H7A72_04510 (ligA)
DNA repair and recombination proteins [BR:
jay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H7A72_04510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H7A72_04510 (ligA)
MMR (mismatch excision repair)
DNA ligase
H7A72_04510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H7A72_04510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RNA_lig_T4_1
HHH_8
Imm71
Motif
Other DBs
NCBI-ProteinID:
QNF95053
LinkDB
All DBs
Position
915591..917801
Genome browser
AA seq
736 aa
AA seq
DB search
MSEIPETDESAEQVQPETPADVPDELRQEWTDLAEQATAAQFAYHVKDAPTIGDAEYDRL
IRRLQEIEEAHPSLRTPESPTQQVGGAIFSTDFTAVDHLERMLSLDNAFEGDDLLAWAQR
VETEVSGFHYLCELKIDGVAINLLYEGGKLTRALTRGDGRTGEDVTLNVRTIEGIPTQLD
DSVHPVPDLVEIRGEVFFRLEDFAELNAGLVEAGKAPFANPRNSAAGSLRQKDPRVTARR
SLHMLVHGMGRREAFDVDSQSHAYELMAAWGLPTSPHYRVLDSITQVRDFIADVERQRHD
YDHEIDGVVVKVDEIAVQRRLGSTSRAPRWAIAWKYPPEEVNTTLLDIQVNVGRTGRVTP
FGVMEPVTVAGSTVSMATLHNGHEVKRKGVLIGDTVVLRKAGDVIPEILGPVVELRDGSE
REFVMPTHCPACGTKLAPQKEGDKDIRCPNSRTCPSQLRERLSSLAGRGAFDIEALGWEG
AVGLLDSGVLTDEGGLFGLTAQDVARVPLFTRAAKKTDPEEAVHDGRVLSANGAKLVDNL
QQAKQQPLWRVLVALSIRHVGPTAARALAQHFGSMAAIREADVDALADVEGVGPTIAASV
REWFDGEGNDWHRGIVDQWAADGVRMEDERDESIRQTLEGVTVVVTGSLERYSRDSAKEA
ILERGGKASGSVSKKTDWVVVGDNAGSKEAKARELGRPILTEEEFTELLETGAVARFADG
DGEGGDRAGDTGGADG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagatccccgagacggacgagtccgcggagcaggtccagccggagacccccgcc
gacgtgcccgacgagctgcgtcaggagtggaccgacctcgccgagcaggcgacggccgcg
cagttcgcctaccacgtcaaggacgccccgacgatcggtgatgccgagtacgaccggctc
atccgtcggctgcaggagatcgaggaggcgcatccctcccttcgcactcccgagtcgccg
acgcagcaggtgggcggggcgatcttctccaccgacttcaccgcggtcgaccacctcgag
cgcatgctcagcctcgacaacgccttcgagggcgacgacctgctcgcgtgggcgcagcgc
gtcgagaccgaggtcagcgggttccactacctgtgcgagctgaagatcgacggcgtcgcg
atcaacctgctctacgagggtggcaagctcacccgggccctgacccgcggcgacgggcgc
accggcgaggacgtcacgctcaacgtgcgcaccatcgaggggatcccgacccagctcgac
gacagcgtgcaccccgtgcccgacctcgtcgagatccgcggggaggtcttcttccggctc
gaggacttcgccgagctcaacgccggcctcgtcgaggcgggcaaggcccccttcgccaac
ccgcgcaactccgccgcgggatcgttgcgacaaaaggacccccgcgtcacagcccgccgc
tcgctgcacatgctcgtccacggcatggggcggcgcgaggccttcgacgtcgacagccag
agccacgcctacgagctcatggccgcgtgggggctgccgacctcgccgcactaccgcgtg
ctcgactcgatcacgcaggtgcgcgacttcatcgccgacgtcgagcggcagcgccacgac
tacgaccacgagatcgacggcgtcgtcgtcaaggtcgacgagatcgccgtgcagcgtcgg
ctcgggtcgacctcgcgggccccgcgctgggccatcgcgtggaagtacccgcccgaggag
gtcaacaccacgctcctcgacatccaggtcaacgtcgggcgcacggggcgggtgaccccc
ttcggcgtcatggagcccgtgaccgtcgccgggtcgaccgtctcgatggccacgctgcac
aacggccacgaggtcaagcgcaagggtgtgctcatcggcgacaccgtcgtgctgcgcaag
gccggcgacgtcatccccgagatcctcgggccggtcgtcgagctgcgcgacgggagcgag
cgcgagttcgtcatgccgacgcactgcccggcctgcggcacgaagctcgccccgcagaag
gagggcgacaaggacatccgctgccccaactcgcgcacctgccccagccagctgcgcgag
cggctgtcgtcgctcgccgggcgcggcgccttcgacatcgaggcgctcggctgggagggc
gccgtcgggctcctcgactccggcgtgctcaccgacgagggcgggctcttcggcctgacc
gcgcaggacgtcgcccgcgtgccgctcttcacccgggcggcgaagaagaccgacccggag
gaggccgtccacgacggtcgggtcctgtcggccaacggcgccaagctcgtcgacaacctc
cagcaggccaagcagcagccgctgtggcgggtgctcgtcgcgctgtcgatccggcacgtc
gggccgacggccgcacgggccctggcgcagcacttcggctcgatggccgcgatccgcgag
gccgacgtggacgccctcgccgacgtcgagggcgtcgggccgacgatcgccgcctcggtg
cgcgagtggttcgacggcgagggcaacgactggcaccgcggcatcgtcgaccagtgggcc
gccgacggcgtgcgcatggaggacgagcgcgacgagtcgatccggcagaccctcgagggc
gtcacggtcgtcgtcaccggctcgctcgagcgctactcccgcgactccgccaaggaggcg
atcctcgagcgcggcggcaaggcctcgggctcggtgagcaagaagaccgattgggtcgtc
gtcggcgacaacgccggctccaaggaggccaaggcccgcgagctcggccgcccgatcctc
accgaggaggagttcaccgagctgctcgagacgggtgccgtggcgcgtttcgccgacggt
gatggcgaagggggcgaccgcgccggtgacacgggtggcgccgacggatga
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