Jatropha curcas (Barbados nut): 105644518
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Entry
105644518 CDS
T03922
Name
(RefSeq) ABC transporter I family member 21
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105644518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105644518
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105644518
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_28
AAA_5
nSTAND3
Zeta_toxin
SMC_N
AAA_23
AAA
NACHT
AAA_18
AAA_33
AAA_22
SRP54
AAA_15
FtsK_SpoIIIE
AAA_30
PduV-EutP
DUF3584
AAA_16
AAA_13
Motif
Other DBs
NCBI-GeneID:
105644518
NCBI-ProteinID:
XP_012085289
UniProt:
A0A067JUL0
LinkDB
All DBs
Position
Unknown
AA seq
297 aa
AA seq
DB search
MAEKAWKNEESENEKQNSISVVGMQFAYEGQSPLFYGFNLNTLPGSRYLLVGANGSGKTT
LLRILAGKHMVGGRDVVQVLNRSAFHDTQLVCSGELAYLGGSWSKTVGSAGEIPLQGDFS
AEQMIFGVEGIDPARREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLVPFKVLLLDEV
TVDLDVVARIDLLEFFKQECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAKKLTE
VSELRSSANLLSVVESWLRSETKSEKEKPTNPPPEKQKTSPFGASPFMSSRHMAYYR
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaaagcatggaaaaacgaagaatccgaaaatgagaaacaaaatagtatcagt
gtggttggtatgcaatttgcatacgaaggacaatctcctctcttctacggtttcaatctc
aatacccttccaggatctcgctaccttcttgtcggggctaatggatctggaaagaccact
ttgctgaggattctggcgggtaagcatatggtaggaggaagagatgtagtgcaagtgcta
aatcgttcggcttttcatgacactcaattggtttgcagtggtgaattggcctatttaggc
ggttcttggagtaaaactgttggatctgctggagagattccactccagggagacttctct
gcagaacaaatgatatttggagttgaagggattgatcctgctaggagagaaaagttaatt
gatttgcttgatattgatcttcaatggcgtatgcataaggtatctgatggacaacggcgt
cgagtccagatctgtatgggtcttcttgttccatttaaggttcttttactagatgaggtc
acagttgacttggatgttgttgccaggatagatttgctagagttcttcaagcaagaatgt
gaacagagaggtgctacaattgtatatgcaactcatatttttgatggattggaaacatgg
gcaacacatttagcctacattcaggatggtgaactgaggagggccaagaagttaacagaa
gttagtgagttgagaagttctgccaatctgctctcagtcgtcgagtcctggctccgctct
gaaacaaagagcgagaaagagaaaccaactaaccctcctcctgaaaagcaaaagacctct
ccctttggtgcttctccttttatgtcatccagacacatggcctactatcgctaa
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