KEGG   Jatropha curcas (Barbados nut): 105645890
Entry
105645890         CDS       T03922                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105645890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jcu03021]
    105645890
Enzymes [BR:jcu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     105645890
Transcription machinery [BR:jcu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     105645890
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7
Other DBs
NCBI-GeneID: 105645890
NCBI-ProteinID: XP_020539595
LinkDB
Position
Unknown
AA seq 1453 aa
METDFSDEQQVPSALLTALSFGISTEAEKEKLSVLAIDAVGEVTDPKLGLPNPSFRCSTC
GSKDSKFCEGHFGVIKFPFTIVHPYYLSEVVKILNKVCPGCKSIRKESKRTDSKSKENLH
KGCKYCVGNTIGGYPTMKFSVSSEEIFRKNVIIAKISERPPQNSHKRGRKKRLAADYWDI
IPKDEQQEENTLRPNQRVLTHAQVRHLLKDVDPNFIKKFVLKTDSIFLNCFPVTPNCHRV
TEVTHAFSNGQRLVFDERTRAYKKLVDFRGTAKELSFRVLDCLKTSKLNPDNSVNNDDMY
ALQRKINDSASNSSGLRWVKDVVLGKRNDNSFRMVVVGDPNIKLSEIGIPCHIAERLQVS
EHLTKWNRERLTTCCEVRLLEKGEMHVRREGNLVRVRRTKDLRIGDIIYRPLNDGDTVLI
NRPPSIHQHSLIALSVKVLPAAAALAINPLCCPPFRGDFDGDCLHGYVPQSVDTRAELCE
LVALDKQLTNVQSGRNLLSLNQDSLVAAHLVMEDGVFLSLFEMQQLQMFCPRQLLSPAIV
KAPLPNDCAWTGKQLVSMLLPRGFDHDFPSNNVYIRDGELISSEGSFWLRDTDGNLFQSL
IKHCQSQVLDFLCTAQEVLCEWLSMRGLSVSLSDLYLCPDSYAWKNMMCEVSYGLQDADH
TCNIKQFMVDSCRDFLAGNGEDDEHPMGLDVEHLCYEKQRSAALSQASVDAFKHVFRDIQ
ILAYKYASKDNALMTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRMPHQLSCDAWNKQ
KDDNATECAKCYIPSAVVKSSFLTGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFF
MRDIHAAYDGTIRNAYGNQLVQFSYYNREETSCPTNCSGQIIDTFDGIGGRPVGSLAACA
ISEAAYSALDQPISLLEKSPLLNLKNVLECGLKKSNAHKSVTLFLSDKLGRRRHGFEYGA
LEVQNHLERLLFSDIVSISRIIHSPQSDSKTRFSPWVCHFHVDKEIMKKRSLSIHSIIDA
LYKQCKSQTILPNVQITCKDCSVADNHREIEDTLCITVTVIEKAKNSSIKLDTIRDLIIP
FLLETVLKGLMEIEKVDILWNERPRIQKSHNRSYGELYLRVSMSGRSDKTRLWNLLVDHC
LPIMDMIDWTRSHSDNIRDFCLAYGIDAGWEFFLNNLKSAISDVGKSVLPEHLILVANCL
SVTGEFVGLNAKGWKRQREHASVLSPFVQACFSSPGSCFIKAAKGGVMDDLRGSLDALAW
GKTPPVGTGQFDIIYSGKGFELSKPVDVYDLLGSQMSAEKQNYEFEVPFTRGCKSDKYGP
QFVYNTDDYVPKGTLERLRRLLTYNDIHRLSQALSKILNKYPVDQQLNEADKCTLMSALY
FHPRRDEKIGSGAQDIKVVNHPEYQGSRCFSVVRTDGTIEDFSYRKCVHGALEIIAPQKA
RRYREKHLQSRNP
NT seq 4362 nt   +upstreamnt  +downstreamnt
atggagactgatttttctgacgagcagcaagtgccatctgctctgttaactgccctttcg
tttggtatttcgactgaggcagaaaaggaaaaactttcagttctagcaattgatgcagtt
ggtgaggtcactgatcccaagttgggattgccaaatccatcttttcgatgctccacttgc
ggatccaaagattcaaaattttgtgaaggtcattttggggttattaaatttccattcacg
atagttcatccttattacctgtccgaagttgtaaagattttgaacaaagtttgcccagga
tgtaaatccatccggaaagagtccaagcggactgattcaaaatctaaagaaaatctgcat
aagggttgcaaatattgcgttggaaatacaataggtgggtatcctactatgaagttttct
gtttcttctgaagaaatcttcaggaaaaatgtaatcatagcaaaaatcagtgaaaggcca
ccgcaaaactctcacaagagaggtcgaaagaaaaggttggctgctgattattgggatata
attccaaaggacgaacaacaagaagaaaacactttgagaccaaaccaaagagttctgacg
catgcacaggttcgtcatctgttgaaggatgtggatccaaatttcataaaaaagtttgtt
ttaaagacagattcaattttccttaactgtttcccagtaacaccaaattgtcatcgtgtg
acagaagttactcatgcattttctaatggccagcgcttggtctttgatgaacggactagg
gcttacaaaaaattggttgatttcagagggacagcaaaagaactgagttttcgtgttctg
gactgcctgaaaacttctaagctaaacccagacaattcagtaaataatgatgatatgtat
gcgctgcaaaggaagatcaatgattctgcctccaattcatctggtttaagatgggttaaa
gacgttgttcttggaaaacgaaatgataattcattccgtatggtggttgttggtgatcct
aatattaagctcagtgaaattggtattccctgtcacattgcagaaaggttgcaagtttca
gaacatctgacaaaatggaaccgggagaggttgactacttgttgcgaagtacgtcttctt
gagaagggtgagatgcatgtccgcagagaaggaaatctggttcgggttcgtcgtactaag
gatctccgcattggggacatcatttataggcctctaaatgatggagatactgttttgatt
aataggcctccttctatacatcaacactccctcattgcactctctgttaaagttctcccg
gcggccgcagctcttgctatcaatccactttgttgtcccccatttcgtggagattttgat
ggtgattgcctacatggttatgttcctcaatcggttgacacgagagctgagctctgtgag
cttgttgcgttagataagcaattaactaacgtacagagtggcaggaatcttctttctctc
aatcaagatagtttagttgctgctcacttggtcatggaggatggagtattcttaagcctg
ttcgaaatgcagcaactgcaaatgttttgtcctcggcaattgctgtctcctgctattgtg
aaagctccattgcctaatgactgtgcttggactggaaagcaattggttagcatgctccta
cctcgaggttttgatcatgattttccttcaaataatgtttacattcgagatggagaactt
atttcttctgaaggttctttttggctacgtgacactgatggaaacctctttcaaagcctc
ataaaacactgccagagtcaagttcttgactttttgtgtactgctcaagaagttctttgt
gagtggttgtcaatgaggggcttgagtgtttcgctctctgatttatacctctgccctgac
tcatatgcatggaaaaacatgatgtgtgaagtttcatatggactacaagatgcagatcat
acatgtaacataaaacagttcatggtggattcttgccgagatttccttgctggaaatggt
gaagatgatgagcatcccatgggtttggatgtagagcacttgtgttatgagaaacagaga
tctgctgcactcagtcaagcttctgttgatgctttcaagcacgtatttcgtgatattcaa
attttagcctacaaatatgctagtaaggacaatgcattgatgaccatgtttaaggcagga
agtaagggtaatctgctgaaattagtgcagcatagcatgtgtctagggctgcaacattca
cttgttccattatcctttagaatgcctcaccaactctcttgtgatgcttggaacaagcaa
aaggatgacaatgctactgaatgtgccaagtgttatatcccatctgccgtggttaaaagt
tcttttctaacaggtttgaatcccttagaatgttttgtccattcagtaacaagtcgagat
agctctttcagtgacaatgctgatcttcctgggactttaactcggagacttatgttcttc
atgcgtgatatacatgctgcatatgatggaacgataagaaatgcatatgggaatcagctt
gttcagttctcttattataatcgtgaggaaacatcttgtccgactaattgcagtggccag
atcattgatacttttgatgggataggtggccgacctgtgggttcattagctgcttgtgcc
atctctgaagcagcgtatagtgctttggatcaaccaatcagtctacttgaaaaatcacct
ctgctaaatctaaagaatgtactagagtgtggtctgaaaaagagtaatgctcacaaatct
gtgactctatttttatctgacaaacttggaagacggagacatggttttgagtatggtgcc
ttagaagttcaaaaccacttggagagactactgttttcagatattgtttctatttcaagg
ataattcattctccacagtctgacagcaaaacgcgtttcagtccttgggtttgccatttc
catgtggacaaggaaattatgaagaagagaagtctaagtattcattccataattgatgct
ctgtataagcagtgtaaatcacaaacaattctgcccaatgtgcaaattacatgcaaggac
tgttctgtagccgacaatcacagggaaatagaagatacactatgtattactgttactgta
attgagaaggccaagaactcatctataaaattggacacaattcgagacctgattattcct
tttcttcttgaaacagttttaaaaggattaatggagatagagaaggtggatattctatgg
aatgaaagaccaaggatacagaagtcgcataatcgttcctatggtgagctctacttaagg
gtttcaatgtcaggaagatctgacaaaacaagactctggaacttacttgtggatcactgt
ctcccaataatggatatgattgattggacacgcagtcattcagataatatacgcgatttt
tgtttggcctatggaatagatgctggatgggaatttttccttaataatttgaagtctgca
atatctgatgttggcaagagcgtacttcccgaacatttgattcttgttgcaaattgccta
tcagttacaggcgagtttgttggtctaaatgcaaaaggctggaaacggcaaagagaacat
gcatcagtcctttcaccatttgtgcaagcatgcttttctagtcctggtagttgcttcatc
aaagctgccaagggaggagtcatggatgatcttcgagggagcttggatgctttggcatgg
gggaagactcctcctgttgggactggacagtttgatattatctactctgggaagggtttt
gaactttcaaagccagtagatgtctacgacctgctgggtagccaaatgagtgctgagaag
cagaattatgagttcgaagtaccttttactcggggctgcaaatctgacaaatatggtccc
cagtttgtgtacaatactgatgattatgtcccaaaaggaacattggaaaggttaagaagg
ttgttgacatataatgatatccatagactctcccaggctctcagcaaaatattgaataag
tacccggtagatcaacaattaaatgaagctgacaaatgtaccttgatgagtgctttatat
tttcatcctcggagagatgagaaaattggatctggagcacaagatatcaaggttgtaaat
catccagaatatcaaggttcacgctgcttttcagtggttagaacagatgggacaattgag
gacttctcatatcgcaaatgtgtccatggtgctcttgagatcattgcccctcaaaaggct
agaaggtaccgcgaaaaacatctgcaaagccgcaatccataa

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