Jatropha curcas (Barbados nut): 105647651
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Entry
105647651 CDS
T03922
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
105647651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105647651
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105647651
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
105647651
NCBI-ProteinID:
XP_012089209
UniProt:
A0A067JVR9
LinkDB
All DBs
Position
Unknown
AA seq
965 aa
AA seq
DB search
MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDNLYLDMNGII
HPCFHPEGKPAPPTYDVVFKSIFDYIDHIFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKEFEAEGKLLSAKEKPETSDSNVITPGTQFMAVLSAALQYYIQ
MRLNHNPGWRYTKVILSDANVPGEGEHKIMTYIRLQRNIPGFNPNTRHCLYGLDADLIML
SLATHEIHFSILREMVTFPGQQEKCFSCGQTGHLAAECHAKQGDNALDWNVVDDSPIHKK
KYQFLNIWVLREYLQYELAIPSPPFEINFERIVDDFVFMCFFVGNDFLPHMPTLEIREGA
INLLMHVYRKEFSAMGGYLTDAGEVNLDKVEHFIQSVAIYEEQIFQKRTRIQQALENYEE
MKIKARKESSEEIPAPVADKVKLGEPGYKERYYAEKFELSKPDEIDRVREDVILNYVEGL
CWVCHYYYQGVRSWRWFYPYHYAPFASDLKGLTDLEITFFPGEPFKPFDQLMGTLPAASS
NALPEEYRKLMTDPSSPIYKFFPSDFEIDMNGKRFSWQGVAKLPFIDERKLLSQTKKLES
SLTEEERVRNSKMHDLLYVHLAHPLAAKITAYYQANILLRPFERFCWEIDTNASSGMNGY
LWLDERNVWRSVVPSPVNGLPDIVHNQVLNITYLAPKDHIHIPELPSGVVMPEKILKPLD
VKPFPTLWHEDNSGRRYQGRDRPQVPGAIAGPLLGEAAHRLVKTTLNIRSGGSSSRFSEQ
VPYRNIPGNHTFNRTRPAGHYSGQEKGYIDDPNFYYGHHNNQQGLISNTRFPPLSNGVTG
NRNNFRNQERAQYPEQYRDLRTGISALTVEENNRRPPVVVMQRMPTSGYGSNLPNQFEQN
LGPLPSPPTNWIGKGAGDADMYFRQEAVQRSANEKQVKQVYQIKTRAAQETSHLVTREAS
DLNQQ
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgccggcgttttacaggtggctcgcagaccggtatccactagccattgtcgat
gtagttgaagaagaacctaaagaagatgccaatggcgtctctatccctattgatgtctca
agacctaaccctaacggcgttgagttcgataacttgtatttggatatgaatggtataatt
catccttgtttccatccagaagggaagcctgcgcctccaacttatgatgttgtcttcaaa
tcaatatttgattatattgaccatattttctcattggttcgcccgaggaagcttctatac
ttagcaattgatggggttgcacctagagctaaaatgaatcagcaacggtctcgacgcttt
agagcggcaaaagatgctgctgaagcagaagctgaggaagaaagattgagaaaagaattt
gaggcggaggggaagctcttatctgctaaagaaaaacctgaaacatctgactctaatgtc
atcactcctggcactcaatttatggcagtgctatcagctgcacttcaatattatattcag
atgagattaaaccacaacccaggctggcggtatacgaaggttattctttctgatgcgaat
gttcctggtgagggagagcacaaaatcatgacatatataagattacaacgtaatattccc
ggtttcaatccaaacacacggcattgtctatatggtctggatgcagatttgattatgctg
tctttagcaacacatgaaattcatttttcaatattgagagagatggtcacgtttcctggg
caacaagagaagtgttttagctgtggtcaaactggccatcttgcagctgagtgtcatgct
aagcaaggagataatgctttggattggaatgtagtggatgatagcccaattcacaagaag
aaatatcagttccttaacatctgggtgttgcgagagtatttgcaatatgagttggcaatt
ccaagtcctccatttgagataaactttgaacggatagtggatgactttgtgtttatgtgt
ttctttgttggcaatgactttcttccccacatgccaacgttggaaatcagggagggtgct
ataaatttgttgatgcatgtatacagaaaagagttctctgcgatgggtggttatcttact
gatgcgggtgaggttaatctagataaggtagaacattttatccagtcagttgcgatttat
gaagaacaaatctttcagaaaaggactcgtatacagcaggcattggaaaattatgaggag
atgaaaatcaaagcaagaaaggagtcctctgaagagataccagcaccagttgcagataag
gttaaattaggggaacctggttacaaagaaagatattatgctgagaaatttgagttatca
aagccagatgaaattgatagagttagagaagatgttattttgaactacgtggagggtttg
tgttgggtctgccactattactaccagggtgttcgctcttggcgatggttttatccgtac
cattatgctccatttgcctctgatctcaagggccttactgacctggaaataactttcttt
ccgggagagccgtttaaaccctttgatcagctaatgggaaccctaccagctgccagttct
aatgctttgccggaagaatacaggaaattgatgactgatccatcatcaccaatatataaa
tttttcccctcagattttgagattgacatgaatggcaaacgcttttcttggcagggtgtt
gccaaattgccattcattgatgagcggaaattactttcccagaccaagaaactagaaagc
tctttaacggaagaagagagagtccgaaatagcaagatgcatgatttgctatatgtccat
cttgctcatcctctggcggcaaaaatcacagcatactatcaggctaacattttgttacgc
ccttttgaaagattttgttgggaaatagacacaaatgccagttctgggatgaatggatat
ctttggttagacgagaggaatgtctggagaagtgtggtcccttcccctgtcaatgggctg
ccagacatagtgcataaccaagttttaaacatcacatatcttgctcctaaagatcatata
cacatccctgaacttcccagtggcgtggtcatgcctgaaaagatcttgaaacctttagat
gttaagccattccccacattatggcatgaagataatagtggtcggcgctaccaaggtcga
gacaggccgcaagtacctggagcaatagcaggtcctttattgggagaggcagctcaccgt
cttgtaaagaccacgcttaatatcagatcaggtggttcatcttctagattttctgagcaa
gtgccatatcgtaatatccctggaaatcatacgttcaacagaactaggccagctggacat
tattctggtcaagaaaagggctacattgatgacccgaacttttattatgggcatcacaat
aaccagcaaggcctaataagtaatactagatttcctccattgtcaaatggtgtgacaggg
aatcggaacaactttaggaatcaggagagagcacaataccctgaacagtaccgagacttg
aggactggaatatctgcattgactgtagaagaaaataatagaaggccacctgtagttgtg
atgcagcgcatgccaacatcaggatatggatcaaatttgcccaaccagttcgagcagaac
ttgggtccacttccatcaccacccactaattggattggtaagggagcaggagacgctgat
atgtactttcgacaagaagcagtgcaaaggagtgctaatgagaagcaagtgaagcaggtt
tatcagattaagacacgggcagcacaagaaacatcacatctagtcactcgagaagcatct
gatctaaaccagcaataa
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