Jeotgalibaca dankookensis: BW727_100059
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Entry
BW727_100059 CDS
T04733
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jda
Jeotgalibaca dankookensis
Pathway
jda03030
DNA replication
jda03410
Base excision repair
jda03420
Nucleotide excision repair
jda03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BW727_100059 (ligA)
03410 Base excision repair
BW727_100059 (ligA)
03420 Nucleotide excision repair
BW727_100059 (ligA)
03430 Mismatch repair
BW727_100059 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jda03032
]
BW727_100059 (ligA)
03400 DNA repair and recombination proteins [BR:
jda03400
]
BW727_100059 (ligA)
Enzymes [BR:
jda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BW727_100059 (ligA)
DNA replication proteins [BR:
jda03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BW727_100059 (ligA)
DNA repair and recombination proteins [BR:
jda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BW727_100059 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BW727_100059 (ligA)
MMR (mismatch excision repair)
DNA ligase
BW727_100059 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BW727_100059 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
RNA_ligase
HHH
DUF4796_N
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AQS52469
UniProt:
A0A1S6ILQ6
LinkDB
All DBs
Position
66754..68790
Genome browser
AA seq
678 aa
AA seq
DB search
MTKLTLLESQARVDALREQLNKHSYAYYVLDAPTISDQEYDKLYHELEEIERVYPELVVP
ESPTQRVGGKILPGFEKVEHDVPMLSLGNAFNREDLEEFDQRIRKLTDQPIRYVCELKID
GLAVSIKYEKGRYVAAATRGDGSVGENVTQNLRTVKAIPLRLQEDLSFEVRGECYMPKQS
FAQLNEERDEKGLDIFANPRNAAAGSIRQLDSKVTASRNLNIFLYSAANLEQLNVSSQSE
LLKKLASIGLRTNPLFRVYDSISQVWEFIEEMQTKRQDLPYEIDGIVIKVDGFASQKDIG
YTIRAPRWAIAYKFPAEIKETVVRDIEWTVGRTGVVTPTAVMDPVSIAGSTVQRASLHNV
DLVKEKDVRIGDTVFIHKAGDIIPEIISVNLEMRKADSTAYSIPETCPACGSQLVHLEEE
VALRCLNPKCPAQIKEGLSHFVSRNAMNISGLGVRVVSQMFEKGLVKDVAGLYSLTVDDL
LKLDKVKDKSAHNFLEAIDKSRDNSLERLIFGLGIQHVGAKAAKMLAETFETMAGVMQAT
YEEIVAIEGFGQAIANSVILYFSLPEVKELIEELAKQGVNMRYKGPRKAAVATTESIWQG
KTVVLTGKLYTYTRPEATEMIERLGGKVTGSVSKNTDWLIAGEAAGSKLKKAQSLNIPVW
TEAEMVAHLERSEISENQ
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactaaattaacattattagagtcacaagcacgtgttgatgcgcttcgtgaacaatta
aataagcacagttacgcctattatgttttagatgcgcccacgatttctgaccaagagtat
gacaaactttatcatgagttagaagaaattgaacgcgtatacccggaattagttgttcct
gaatcacctacccaacgtgtgggtgggaaaattttacctggatttgaaaaagttgaacac
gacgttcctatgctgagtctgggaaatgcatttaatcgagaagatttggaagaatttgat
cagcgcattcgcaaactaacagatcaacccatccgttatgtctgtgaattgaaaattgac
ggtctggcggtttcaatcaaatatgaaaagggccgttatgtagcggcggcaacgcgagga
gacggctctgttggtgagaatgtaacgcaaaatctgcggacggttaaagcgattccgcta
cgcttacaagaagatctttcttttgaagttcgtggagaatgttacatgcccaagcaatct
tttgctcagttaaatgaagaacgcgacgaaaaagggctggatatttttgctaatccgcga
aacgcagccgctggttccatccgtcaattggattcaaaagtgacagctagtcgtaattta
aatatttttctttattcagcagctaacttagaacaactaaatgtttcttcacaatcggaa
ttattaaagaagcttgcttctattggtttaagaaccaatccactctttcgtgtttatgat
tccatttcccaagtatgggaatttattgaagagatgcaaaccaaaagacaagacttacct
tatgaaattgatggtattgtcattaaggttgatggcttcgctagccaaaaagatatcggt
tataccattcgcgcgccacgttgggcaattgcatacaaatttccagctgaaatcaaagaa
acggttgtacgtgatattgaatggacagtcgggcgaactggcgttgtcacaccgactgct
gtcatggatcccgtttcaattgccggttcaacggttcaacgtgctagtcttcataatgtc
gacttagtaaaggaaaaggatgtccgcattggcgatactgtttttattcataaggcaggc
gatattatcccagaaattatttcggttaatttagagatgagaaaggctgatagcactgcc
tattcaatccctgaaacgtgtccagcttgtggaagccagttggtgcatttagaagaggaa
gtcgccttaaggtgcctcaaccctaaatgtccagctcaaataaaggaaggactctctcat
tttgtttcacggaatgctatgaacatatctggtttaggagtccgagtggtcagccaaatg
tttgagaaagggctcgttaaagatgtagcggggctttatagcttaactgtggatgatctt
ttgaaattagacaaagtaaaagataaatcagcacataattttctagaagctattgataag
agtcgtgataattccttagaacgtctcatttttggtttaggaattcagcatgtcggtgcg
aaagcagccaaaatgctagcagaaacttttgaaacaatggcaggcgtcatgcaagctacc
tatgaagaaattgttgcgattgaaggtttcggccaagcaatagccaatagtgttatcctt
tatttttctttaccagaagtaaaagaattaattgaagaattagccaaacaaggtgtcaat
atgcgttataaaggtcctagaaaagccgcagtagcgaccacggaatcaatttggcaaggc
aaaacagttgttttaactggtaagctctacacctatacacgtcccgaagctactgaaatg
attgaacgcttaggtggaaaggtcactggaagtgtctccaaaaataccgattggttgatc
gcaggcgaagcggccgggagtaaacttaaaaaagcccagtcgctcaatattccggtttgg
accgaagctgaaatggttgcccatctagaaagaagtgaaataagtgaaaatcaataa
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