Jonesia denitrificans: Jden_1716
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Entry
Jden_1716 CDS
T00972
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jde
Jonesia denitrificans
Pathway
jde03030
DNA replication
jde03410
Base excision repair
jde03420
Nucleotide excision repair
jde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Jden_1716
03410 Base excision repair
Jden_1716
03420 Nucleotide excision repair
Jden_1716
03430 Mismatch repair
Jden_1716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jde03032
]
Jden_1716
03400 DNA repair and recombination proteins [BR:
jde03400
]
Jden_1716
Enzymes [BR:
jde01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Jden_1716
DNA replication proteins [BR:
jde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Jden_1716
DNA repair and recombination proteins [BR:
jde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Jden_1716
NER (nucleotide excision repair)
GGR (global genome repair) factors
Jden_1716
MMR (mismatch excision repair)
DNA ligase
Jden_1716
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Jden_1716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ACV09362
UniProt:
C7QYX3
LinkDB
All DBs
Position
complement(1858983..1861379)
Genome browser
AA seq
798 aa
AA seq
DB search
MARACQWSVDNSEVTTNDQNAHDSSLARPFTGPEVAAGSAAARIVDAAAEVSLQEQWERL
ARLIQRYQFEYYIQGESSVPDADYDALLAELVAVEEQLGGAPQGSPTQRVGGTFSTEFEE
VDHRQPMLSLDNAFSLEELQAWADRVHGELSGGAVSYLCEVKIDGLAVSLTYERGELVRA
LTRGDGQTGEDVTLNVQTIRSIPQRLGGDPAFHPQVVEIRGEVFMKVADFADLNDSQARQ
GGKTFANPRNAAAGSLRQKDPRVTAQRRLSMYAHGIGALEWDGQSPVDLARQSDVYALYQ
QWGIPVSSHNSVEHDLDAVTRKIEYYRENRHSIEHELDGFVIKVDEVAAQKQLGSTSRAP
RWAIAFKYPPEEVTTRLLDIQVNVGRTGRVTPFGMMEPVLVAGSTVSMATLHNFHEVRRK
DVRPGDTVIVRKAGDVIPEILGAVESLRPDGLPQWEPPTHCPSCGTEIREAKEGDKDLRC
PNAQSCPSQLRERVFALASRGAFDIEALGWESAVALCDPESSRPVGPDAPQLDGPPLTPV
LTSEAHIFDLADENSSLTRSLKDVVVWRERKLKSGTRWELVPYFYTRATASKSSVPTATT
VKLFEEVQKAKSQPLWRVLVALSIRHVGPTAARALATEFGSMDRIRAASVSELAAVDGVG
STIAESVVEWFREVDGNQWRPAIVAAWAKAGVSMEDIPDESVQRTLEGITVVVTGGLENF
TRDGVKEAIVARGGKASGSVSKKTDFVVVGANAGSKETKARELGLRILNEEEFTRLLAGG
PDAVNASHSSESVSEVSD
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgcgcatgtcagtggtccgtggacaatagtgaggtgaccacgaatgaccaaaac
gcacatgactcttcactagcacgtccgttcactggcccggaggtggctgctggttctgcc
gctgctcgcatcgtcgacgctgccgcagaggtgtcgctacaggagcagtgggagcgactt
gctcgtctgatacagcgctaccagttcgagtattacattcagggggaatcatctgtccct
gatgcagattatgatgcgctgcttgcggaactggtcgctgttgaggagcagttagggggc
gcgcctcagggttctccaacccagcgagtggggggaactttttcgactgaattcgaagaa
gttgatcaccgtcagcccatgctgtcgttggacaacgcgttttcccttgaggaattacag
gcctgggctgatcgtgttcatggtgaactgtcgggtggggcagtgtcctacttgtgtgaa
gtgaaaatagatgggttagccgtgtctctcacttatgagcggggtgaactcgtccgggca
ctcactcgtggtgatggtcaaacaggtgaagacgtcacgctgaacgtgcagacaatccgt
tcgattcctcagcgtttgggcggagatccagcgttccacccgcaggttgtggagattcgc
ggggaagtcttcatgaaggtcgctgattttgctgatttgaacgactcgcaggcgcgccaa
ggcgggaaaaccttcgcgaacccacgcaacgcagcggctggatcattgcggcaaaaagat
cctcgggtcactgctcaacgacggctgtctatgtacgctcacggtattggtgcgctggag
tgggacggtcagtctccggtggacttggctcgccaatccgacgtgtatgcgctgtaccaa
cagtgggggatcccagtgtcgagccacaattcagtggaacacgaccttgatgcagtgacg
aggaagattgagtactaccgggagaaccggcactccattgagcatgaacttgatgggttt
gtcatcaaagtggatgaggtcgctgctcaaaaacagctgggttcaacaagccgcgcaccc
cggtgggctattgcatttaagtacccacctgaagaggtcacgacacggttgcttgatatc
caggtgaatgtgggtcgcactggcagggtgaccccgtttgggatgatggaacctgtgcta
gttgcagggtcaacggtgagcatggcgacgctccacaatttccatgaggtgcgccgtaag
gatgtgcgtcccggggataccgtcattgtgcgtaaagcaggcgatgtgattcctgagatc
ctgggcgcagtggagtcactgcgacctgatgggttacctcagtgggaaccgcccacgcat
tgtccgtcgtgtggcaccgagattcgtgaagcgaaggagggcgacaaagaccttcgctgt
ccgaacgcgcagtcgtgtccgtcgcagttgcgagaacgcgtctttgccttagcgtcccgt
ggtgcgtttgatatagaagcgctcggatgggaatctgctgtggcgttgtgcgatccggag
agctctcgcccagtggggcccgacgctccacagcttgacgggccgcctcttaccccggtt
ctcaccagcgaggcgcacatttttgaccttgcagatgagaacagttcgttgacgcgcagc
ctcaaggatgttgtggtgtggcgggagcggaaattgaagtctggcacccgctgggagcta
gttccctacttttacacccgggcaacggcttcgaagtcttcggttccaactgcgacgaca
gtcaagctgtttgaggaggtacagaaggcaaagagccagccattgtggcgggtgttggtg
gcattgtcgattcgccatgtggggcctaccgcggcgcgagctcttgccacagagtttggt
tcgatggatcgcatccgagccgcttctgtgtcggaactcgccgcagttgacggtgtgggc
tccaccattgcggagtctgtcgttgagtggttccgtgaggtggacggcaatcagtggcgt
cccgcgattgtcgctgcgtgggcgaaagctggggtgtctatggaggatattcccgacgag
tctgtgcaacgcacgttggaaggaatcactgttgttgtgaccggtgggttggagaacttc
actcgtgatggggtgaaggaagcgattgtggcacggggcggcaaagcgtccgggtcggtg
tctaagaaaaccgattttgtggttgtgggcgcaaatgcggggtcgaaggagacgaaggcg
cgagagcttggcttgcgaattctgaatgaagaagagttcacccggttgcttgccgggggt
cctgatgcggttaatgcgagtcacagtagtgagtctgtctcagaagtttcggactag
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