Jeotgalibaca ciconiae: EJN90_08340
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Entry
EJN90_08340 CDS
T05782
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jeh
Jeotgalibaca ciconiae
Pathway
jeh03030
DNA replication
jeh03410
Base excision repair
jeh03420
Nucleotide excision repair
jeh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJN90_08340 (ligA)
03410 Base excision repair
EJN90_08340 (ligA)
03420 Nucleotide excision repair
EJN90_08340 (ligA)
03430 Mismatch repair
EJN90_08340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jeh03032
]
EJN90_08340 (ligA)
03400 DNA repair and recombination proteins [BR:
jeh03400
]
EJN90_08340 (ligA)
Enzymes [BR:
jeh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EJN90_08340 (ligA)
DNA replication proteins [BR:
jeh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EJN90_08340 (ligA)
DNA repair and recombination proteins [BR:
jeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EJN90_08340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EJN90_08340 (ligA)
MMR (mismatch excision repair)
DNA ligase
EJN90_08340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJN90_08340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AZP05735
UniProt:
A0A3S9HEC9
LinkDB
All DBs
Position
1765304..1767340
Genome browser
AA seq
678 aa
AA seq
DB search
MKKIILAEAEERAAELREELQRHSNAYYVLDKPTISDYEYDQLYQELVDIETDYPELITS
ESPTQRVGGKILPGFEKVEHDVPMLSLGNAFNKEDLLNFDQRIKRLTDDSVQYICELKID
GLAVSLRYENGVFQRGATRGDGVVGEDITQNLRTVKAIPLRLKQPYTFEVRGECYMPKSS
FAKLNEERDEKGQEIFANPRNAAAGSLRQLDSSVTASRNLNIFLYGAANFDDLDVSSQSR
LLEKLADIGLRTNPERRIFTSMEDVWSFIEEMTEKRTELTYDIDGIVIKVDDFSTQEEIG
YTVKAPRWAIAYKFPAEEKETILRDIEWTVGRTGVVTPTAVMDPVFIAGSTVQRASLHNV
DLLEEKDVRIGDTVVIHKAGDIIPEILHVVLEKRHSDSQPYAIPEFCPACDSKLAHLEEE
VALRCLNPKCPAQMKEGLSHFVSRNAMNITGLGVRVVSQMYEKGLVNDLSDLYTLTMDDL
LKLDKIKEKSATNILTAIDASRENSLERLVFGLGIRNVGSKAARMLAEEFETIDRLMDAT
KEEIESIEGFGEIIAESVVAFFSLEEVHELIEAFRNNGVNLTYKGRRKAEKVDTPSIWQG
KTVVLTGKLHHYTRQEATEMIQNLGGKVTGSVSKNTDWLVAGDEAGSKLTKAQSLGVPVW
SEEEMLKHLERSETSENQ
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaataatattagcggaagctgaagaacgagcagctgaattacgtgaagaactg
caaaggcacagtaatgcttattatgttttagataagccaacgatttcggattatgaatac
gatcagttatatcaagaattagttgatattgaaacagattatccagaattaatcacaagc
gagtcaccaacccagcgagtcggtgggaaaattctacctggctttgaaaaagttgaacat
gatgttcctatgcttagtttaggaaatgcttttaataaagaagatttattaaatttcgat
caacgtattaaaaggttaacggatgattccgttcaatatatatgtgagctgaaaatagat
ggattagccgtatcgctacgctatgaaaatggtgttttccaacggggggcgacgcgtggt
gatggagtagttggcgaagatattacccagaatttacgcacggtcaaagcgattcctcta
cgtttaaaacagccatatacttttgaagttcgcggagagtgttatatgccgaagtcctct
tttgcaaaattgaatgaggaacgagatgaaaagggacaagaaatctttgccaatccaaga
aacgccgcagccggctcgttgcgtcagttagattcgagtgttactgctagtagaaattta
aatatatttttatacggagcagcaaattttgatgacttagatgtttcttctcagtcacgg
ttgttagaaaaattagcggatataggtttgcgaacgaaccctgaacgccgcatatttact
tcgatggaagatgtctggtcttttatcgaggaaatgacagaaaaaagaaccgaactaact
tatgatattgacggcatcgtaatcaaggtagatgatttttcgactcaagaagaaataggt
tatacagtaaaagctccacgttgggcaattgcttataaatttcccgctgaagaaaaagaa
accattttgcgcgatattgagtggacggttgggagaactggagttgtaacacccacagcg
gtcatggatcccgtatttattgccggctctacagtacagcgagcaagtttgcataatgta
gatttattagaagaaaaagatgtacgaatcggtgataccgtagtgatacacaaagcaggt
gacatcattccagaaattcttcatgtagttctagaaaagcgtcactctgatagtcaacct
tatgcgataccagaattttgtccagcctgtgacagcaagttggctcatttagaagaagaa
gtagcattacgttgtttgaacccaaagtgtcctgctcaaatgaaagagggattgtcacac
tttgtttccagaaatgcaatgaacattactggattaggggtacgtgtcgttagtcaaatg
tatgaaaaaggattggtgaacgatctctctgatttgtatactttaacgatggatgatctt
ttgaaactagataaaatcaaagaaaaatcggcaaccaacattttaacggctatcgatgcg
agtagagaaaactcgttggaacggttggttttcgggctcgggattcgaaatgtaggttct
aaagcagcgagaatgcttgccgaagagtttgaaacgattgatcggttaatggatgcaacc
aaagaagaaattgaatcgatcgaaggttttggcgagattattgcggagagtgttgttgca
ttcttctcgttagaagaggttcatgaactaattgaagctttccgcaataacggggtcaat
ttaacttacaaaggtagaagaaaagcagaaaaggttgatacaccatcaatttggcagggt
aaaacagtggtattaactggaaagttacaccattatacccgtcaggaagccaccgagatg
attcagaatctaggggggaaagtaaccggtagtgtatcaaaaaatacagattggttggtt
gcaggcgatgaggcaggcagcaagttaacaaaagcacagtcacttggagtcccagtatgg
agcgaagaagaaatgctgaagcatttagaaagaagtgaaacaagtgaaaatcaataa
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