Jeotgalibaca sp. PTS2502: BW721_06640
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Entry
BW721_06640 CDS
T04689
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jep
Jeotgalibaca sp. PTS2502
Pathway
jep03030
DNA replication
jep03410
Base excision repair
jep03420
Nucleotide excision repair
jep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BW721_06640 (ligA)
03410 Base excision repair
BW721_06640 (ligA)
03420 Nucleotide excision repair
BW721_06640 (ligA)
03430 Mismatch repair
BW721_06640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jep03032
]
BW721_06640 (ligA)
03400 DNA repair and recombination proteins [BR:
jep03400
]
BW721_06640 (ligA)
Enzymes [BR:
jep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BW721_06640 (ligA)
DNA replication proteins [BR:
jep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BW721_06640 (ligA)
DNA repair and recombination proteins [BR:
jep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BW721_06640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BW721_06640 (ligA)
MMR (mismatch excision repair)
DNA ligase
BW721_06640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BW721_06640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
APZ50276
LinkDB
All DBs
Position
complement(1356732..1358771)
Genome browser
AA seq
679 aa
AA seq
DB search
MKKLTLIEAEKRVAELRQSLQTYSHAYYVLDQPLISDAEYDKLYHELVAIETDYPELITK
ESPTQRVGGQILPGFEKVSHEVPMLSLGNAFNKEDLLAFDQRVKKLTDQPIRYICELKID
GLAVSLRYENGVFERGATRGDGVIGEDITQNLRTVKAIPLRLNKPYSFEVRGECYMPKAS
FAKLNEERDEKGEDIFANPRNAAAGSLRQLDSRVTARRNLSIFLYGAADFAELGVKSQSH
LLKELAELGLRTNPQHQVYESMEDVWTFIEEMTTKRLDLSYDIDGIVIKVDQFAAQEEIG
YTVKAPRWAIAYKFPAEEKETLLRDIEWTVGRTGVVTPTAVMDPVFIAGSTVQRASLHNV
DLLKEKDVRLGDTVVIHKAGDIIPEILHVVLDKRPEDSVPYPIPERCPDCDSQLAHLEEE
VALRCLNPKCPAQMKEGLSHFVSRNAMNITGLGVRVVSQMYEKGLVEDLADLYTLTMDQL
LTLDKIKEKSATNILTAIAASKDNSVERLIFGLGIRNVGSKAARMLAEAFDSIDNLMTAT
KEEIAAIEGFGDIIAESVVAFFSLEEVHDLIESFRSNGVNLTFKGRRPTATTSEEASVWA
GKTVVLTGKLTRYNRQEATEMIENLGGKVTGSVSKKTDILVAGEDAGSKLTKAQSLDVAV
WTEEEMLQHLERSETSENE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaattaaccttaatagaagctgaaaaacgtgtagcagaactacgtcaaagttta
caaacatacagtcatgcctattatgttctggatcaaccacttatttctgatgctgaatat
gacaagctttaccatgaattagttgctatcgaaaccgattatccagaactgatcactaag
gaatccccaacccagcgcgttggtgggcagattttacccggatttgagaaagttagtcat
gaggtgccgatgttgagtcttggtaatgcctttaataaagaagacttactggcttttgac
caacgggtgaagaagctaaccgatcaaccgattcgctacatttgtgaattgaaaattgac
ggcttagcggtttcgcttcgctatgaaaatggtgtttttgaaagaggagcaactagagga
gatggcgttattggtgaagatattacgcaaaacttgcgtaccgtcaaagccattccctta
cgccttaacaagccttactcctttgaagtaaggggcgaatgttatatgcccaaagcgtca
ttcgctaagttaaatgaagaacgcgatgaaaaaggggaggacatctttgccaatccgaga
aatgctgcagcaggttcgctgcgtcaattggattctcgtgtgacggccaggcgtaactta
agtatcttcctatatggagcggcagattttgctgaattgggtgttaagtcgcaatcccat
ctgctaaaagagttagctgaactgggattacgaacgaatccacagcaccaagtctacgaa
tcaatggaagatgtttggacttttatcgaagagatgacgaccaagcgactagacttgtct
tatgatattgacggcatcgtgattaaagtggaccaatttgctgctcaggaagaaattggc
tataccgtaaaagcaccacgctgggccattgcttataaatttccagctgaagaaaaagaa
acgctgcttcgtgacattgagtggacagttggccgtacaggcgttgtcacaccaactgct
gtgatggaccctgtgtttatcgcaggttcaaccgtgcaacgagcgagcttgcataatgtg
gatttattaaaagagaaggatgtccgcttaggtgacacggttgtgattcataaggctggc
gatattattcctgaaattttacatgttgttttagacaaacgaccagaagatagcgtccct
tatccgattcctgagcgctgtccagattgtgacagtcagctagctcatttggaggaagaa
gtagcattacgctgcttgaatcctaaatgtcctgctcagatgaaggaaggattatctcat
tttgtctctcgtaacgctatgaatattactggtttaggtgtgagagtcgtgagtcaaatg
tatgaaaaaggactagtcgaagacttggcagatttatatacattaactatggaccagctg
ctaactttagataaaatcaaagaaaaatcagcgaccaatattttaacggctattgctgca
agtaaggacaattcagtggagcgattaatttttggtttaggtattcgtaatgtcggttca
aaagctgctcgtatgctggcggaagcctttgacagtatcgataacctcatgactgccact
aaggaagaaattgcagccattgaaggatttggtgatattattgctgagagtgtcgttgcc
ttcttcagcctagaagaagtgcatgacttgattgagtccttccgtagtaacggtgttaat
ttgacttttaaaggcagacgaccgacagcgacaaccagtgaagaagcatcggtttgggca
ggaaagacagtcgttttaaccggtaagttgactcgctataatcgccaagaagcaaccgag
atgattgaaaatctaggtggcaaggtaaccggtagtgtttctaagaaaacagacatattg
gttgccggggaagatgccggtagtaaattgaccaaggctcagtcacttgatgttgccgtt
tggacggaagaagagatgttgcagcacttagaaagaagtgaaacaagtgaaaatgaatag
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