Candidatus Jettenia sp.: L3J17_15635
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Entry
L3J17_15635 CDS
T07848
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jet
Candidatus Jettenia sp.
Pathway
jet03030
DNA replication
jet03410
Base excision repair
jet03420
Nucleotide excision repair
jet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L3J17_15635 (ligA)
03410 Base excision repair
L3J17_15635 (ligA)
03420 Nucleotide excision repair
L3J17_15635 (ligA)
03430 Mismatch repair
L3J17_15635 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jet03032
]
L3J17_15635 (ligA)
03400 DNA repair and recombination proteins [BR:
jet03400
]
L3J17_15635 (ligA)
Enzymes [BR:
jet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L3J17_15635 (ligA)
DNA replication proteins [BR:
jet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L3J17_15635 (ligA)
DNA repair and recombination proteins [BR:
jet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L3J17_15635 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L3J17_15635 (ligA)
MMR (mismatch excision repair)
DNA ligase
L3J17_15635 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L3J17_15635 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
RNA_ligase
HHH
DUF7783
Motif
Other DBs
NCBI-ProteinID:
UJS17322
LinkDB
All DBs
Position
complement(3668369..3670396)
Genome browser
AA seq
675 aa
AA seq
DB search
MNITSSIKEKIEQLRNAIQCHDRKYYVENNPDISDYEYDQLIKELKHLEELHPNLITSDS
PTQRVGGEPLTHFSTVEHKIPMLSIDNTYSKEELKEFDRRIKRILGIDNDHDIEYVVELK
IDGVAVSLFYEQGLFVRGATRGDGFRGDDVTANLKTIRQIPLRFEFSDKKQKIPSVIEIR
GEVYLSNKEFQKLNEEKEEKGEPQFANPRNAAAGSLKLLDPRITARRNLRIFAYTIAYRE
GLELKTHAECLELIQKFGFPVNPYNQLRKNIEEVIQYCNEWDKRRRELDYMVDGMVIKVN
SLALYNRLGYTSKSPRWVISYKFQPEQAITKIEEIVVQVGKSGTITPVANLAPVQLAGTI
VCRATLHNFEEIQRKDIRVGDHIVLQKAGEIIPQVVHALKEKRNGAEEIFQEPANCPSCN
SMVKKEGVYLRCYNSLCPAQTKRLIKYFANRNAMDIEGLGPALIEQLVDKNLLKDYADIY
YLQYDDLVNLERMGKKSALNLIHAIEESKHRDLNRLISALGINNVGSHTAEVLAEHFDSL
DALAKANQDELESIYEIGPTIARSIAEFFQNKRIREIIEKLKAQGVNTQKLVAQKTGKNP
KVSGKSFVITGILKKYSRNEAETLIKNLGGRVTSSVSKKTNYLITGEDPGTKLHKAKELN
VQVLDEEAFEKMISP
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaatataacatcatcgattaaagaaaagattgaacagcttcgcaatgctatacaatgc
catgatagaaaatattatgttgaaaataatcccgatattagcgattatgaatatgatcag
cttataaaggaactgaaacatctcgaggaattacaccccaatcttattacctccgactct
cctacccaacgggtgggaggagaaccgctcactcatttttctaccgtagagcataaaatt
cctatgttaagtatcgataatacttattcaaaagaggaattaaaagaatttgacaggcgc
ataaaacgtatactggggattgataacgatcacgatattgaatatgtagttgagttaaag
attgatggagtagctgtttctcttttttatgagcagggcttatttgtacgaggagctacc
aggggagatggttttcggggagatgatgtaactgcaaaccttaaaaccattcgccagata
cctttgcgatttgaattttcggataaaaaacagaaaattccatcagtaatcgaaatcagg
ggagaagtttatctgtcaaataaggaatttcaaaaacttaacgaggaaaaagaagaaaaa
ggtgaacctcaatttgcaaatccccgaaatgctgctgctggctcgcttaaacttcttgac
ccgcgcattacagcacggagaaatttacgcatctttgcctatactatagcataccgcgaa
ggtttagaactcaagacacatgctgaatgtttggaacttatccagaaattcggctttccg
gtaaatccttataatcaattacgtaaaaatatagaagaagttattcagtattgtaatgaa
tgggataaacgccgcagagaactggattatatggtcgatggaatggttataaaagttaat
tctctcgccctttataaccgattaggatataccagtaagtcacctcgctgggtaatctcc
tataaatttcagcctgaacaggccattacaaaaattgaagagattgtcgtgcaggtagga
aaaagcggcaccattacccctgtcgccaatcttgctcctgtacagctcgcaggaactatt
gtttgccgtgctacactccataatttcgaagaaattcaaagaaaggacatacgggtagga
gaccatattgtattacaaaaagctggtgagattatcccccaggttgtacatgctttaaaa
gaaaagcgtaatggagctgaagaaatttttcaagaaccggcaaattgcccttcttgcaat
agcatggtaaaaaaagaaggggtatacctgcgctgttataattccttatgtccggcacag
acgaaaaggcttatcaaatacttcgcaaatcgaaatgctatggatatagaagggttagga
cctgcacttattgaacaattggttgacaaaaatttactaaaagattatgctgatatttat
tatctccaatatgatgatctggtaaatctggagcgcatgggtaagaaatctgcattaaac
ttaatccatgccatagaggaaagcaaacatcgcgatttaaatcgtttaatctctgctttg
gggataaataatgtaggttctcataccgcagaagttttggctgaacattttgattccctc
gatgcgttagcaaaagcaaatcaggatgaattagaatcaatttatgaaattggtcccact
attgccaggagcattgctgaattttttcaaaataagcgtatacgggaaattattgaaaag
cttaaagcacaaggggttaatacccaaaaattagtagctcaaaaaaccggaaaaaatcca
aaagtttccggaaaatcttttgttattaccggcatattaaaaaaatactcccgcaatgaa
gccgagacgcttattaagaacttaggtggacgtgtaacatcgagcgtgagcaaaaaaaca
aactaccttataacaggtgaagatccaggaactaaattacataaggcgaaggaattgaat
gtccaggtccttgatgaagaagcatttgaaaaaatgataagcccatag
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