Janibacter limosus: EXU32_10225
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Entry
EXU32_10225 CDS
T05853
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jli
Janibacter limosus
Pathway
jli03030
DNA replication
jli03410
Base excision repair
jli03420
Nucleotide excision repair
jli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EXU32_10225 (ligA)
03410 Base excision repair
EXU32_10225 (ligA)
03420 Nucleotide excision repair
EXU32_10225 (ligA)
03430 Mismatch repair
EXU32_10225 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jli03032
]
EXU32_10225 (ligA)
03400 DNA repair and recombination proteins [BR:
jli03400
]
EXU32_10225 (ligA)
Enzymes [BR:
jli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EXU32_10225 (ligA)
DNA replication proteins [BR:
jli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EXU32_10225 (ligA)
DNA repair and recombination proteins [BR:
jli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EXU32_10225 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EXU32_10225 (ligA)
MMR (mismatch excision repair)
DNA ligase
EXU32_10225 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EXU32_10225 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
RNA_lig_T4_1
Trypan_PARP
Imm71
HHH_8
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QBF46599
UniProt:
A0A4P6MUF1
LinkDB
All DBs
Position
complement(2143772..2145976)
Genome browser
AA seq
734 aa
AA seq
DB search
MASRCRGVGRLRQDGRVSEIPDDARHAWTDLAEQATAAQFAYHVKDAPTISDAEYDRLIR
GLQELEEAHPSLRTPESPTQTVGGAIFSTDFTAVDHLERMLSLDNAFDGDELLDWARRVE
QEVSGFHYLCELKIDGLAINLLYEGGKLTRALTRGDGRTGEDVTMNVRTIAGIPTRLDDS
EHPVPDLVEIRGEVFFRLEDFAELNAGLVEAGKPPFANPRNSAAGSLRQKDPRVTARRPL
HMLVHGMGRREGFDVDSQSHAYELMAGWGLPTSPHYTVFDSMTKVRRFITEVEKQRHEYD
HEIDGVVVKVDEIAVQRRLGTTSRAPRWAIAWKYPPEEVNTKLLDIQVNVGRTGRVTPFG
VMEPVTVAGSTVSLATLHNGHEVKRKGVLIGDTIVLRKAGDVIPEILGPVVELRDGTERE
FVMPTHCPSCGTELGQQKEGDKDIRCPNSRTCPSQLRERLSSLAGRGAFDIEALGWEGAV
GLLDSGVLTDEGGLFGLTAQDIARVPLFTRAAKKTDPHEAVHDGRVLSANGAKLVDNLQQ
AKEQPLWRVLVALSIRHVGPTAARALAQHFGSIGAIRDADEEALADVEGVGPTIAASVRE
WFDGEGNDWHRGIVEQWAADGVRMEDERDESIAQTLEGVTVVVTGSLERYSRDSAKEAIL
ERGGKASGSVSKKTHWVVVGDSAGTKEAKARELGRPILTEDEFTELLETGTVARFAEPEA
EAEPEPEPERKDES
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
gtggcgtcacggtgtcgcggtgtcggcaggctgcggcaggatggacgggtgagcgagatc
cccgacgacgcccgacacgcatggaccgacctggccgagcaggccacggcggcacagttc
gcctaccacgtcaaggacgcaccgacgatcagtgacgccgagtacgaccggctgatccgc
ggcctgcaggagctcgaggaggcgcacccctccctgcgcaccccggagtcgccgacgcag
acggtcggcggggcgatcttctccaccgacttcaccgccgtcgaccacctcgagcggatg
ctcagcctcgacaatgccttcgacggtgacgagctgctcgactgggcgcgccgcgtcgag
caggaggtgagcgggttccactacctgtgcgagctcaagatcgacggcctggccatcaac
ctgctgtacgaagggggcaagctcacccgcgcgctcacccgcggcgacggccgcaccggc
gaggacgtgacgatgaatgtccgcaccatcgcgggcatccccacccggctcgacgacagc
gagcacccggtgcccgacctggtcgagatcaggggcgaggtcttcttccgcctcgaggac
ttcgccgagctcaacgccggcctcgtcgaggcgggcaagcctcccttcgccaacccgcgc
aactctgccgcaggatccttgcggcagaaggaccctcgcgtcaccgcccgccggccgctg
cacatgctcgtgcacggcatggggcggcgcgagggcttcgacgtcgacagccagagccac
gcctacgagctcatggccgggtggggcctgccgacctcgccgcactacacggtcttcgac
tcgatgaccaaggtgcgccgtttcatcaccgaggtggagaaacagcgccacgagtacgac
cacgagatcgacggcgtggtggtcaaggtcgacgagatcgccgtgcagcgccgcctcggc
acgacctcgcgggcaccccgctgggccatcgcgtggaagtacccacccgaggaggtcaac
accaagctcctcgacatccaggtcaacgtcggccgcacggggcgggtcacccccttcggt
gtcatggagccggtgaccgtcgccgggtcgaccgtctccctcgcgacgctgcacaacggc
cacgaggtcaagcgcaagggcgtgctcatcggcgacacgatcgtcctgcgcaaggccggc
gacgtcatccccgagatcctcggaccggtcgtcgagctgcgtgacggcaccgagcgcgag
ttcgtcatgccgacgcactgcccgtcgtgcggcaccgagctcggccagcaaaaggagggt
gacaaggacatccgctgccccaactcgcgcacctgcccgagccagctgcgcgagcgactc
tcctcgctcgccggtcgtggggccttcgacatcgaggccctcgggtgggagggggcggtc
ggcctgctcgactccggcgtgctgaccgacgagggcgggctcttcggcctgaccgcgcag
gacatcgcgcgggtgcccctcttcacccgcgcggccaagaagaccgacccgcacgaggcc
gtgcacgacggccgggtgctctcggccaacggcgccaagctcgtcgacaacctccagcag
gccaaggagcagccgctgtggcgggtgctcgtcgcgctgtcgatccggcacgtcgggccg
accgccgcgcgtgcgctggcccagcacttcggctcgatcggcgccatccgtgacgccgac
gaggaggcgctcgccgacgtcgagggcgtcgggccgaccatcgccgcctcggtgcgcgag
tggttcgacggcgagggcaacgactggcaccgcggcatcgtcgagcagtgggccgccgac
ggcgtgcgcatggaggacgagcgtgacgagtcgatcgcccagacgctcgagggcgtcacc
gtcgtggtcaccggctcgctcgagcgctactcgcgtgacagcgccaaggaggcgatcctc
gagcggggcggcaaggcctcgggctcggtgagcaagaagacgcactgggtcgtcgtcggt
gacagcgccggcaccaaggaggccaaggcccgcgagctgggccggccgatcctcaccgag
gacgagttcaccgagctgctcgagaccgggaccgtggcgcgcttcgccgagcccgaggcc
gaggccgagcccgagcctgagccggagcggaaggacgagtcctga
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