Janthinobacterium lividum: G3257_13650
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Entry
G3257_13650 CDS
T06723
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jlv
Janthinobacterium lividum
Pathway
jlv03030
DNA replication
jlv03410
Base excision repair
jlv03420
Nucleotide excision repair
jlv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jlv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3257_13650 (ligA)
03410 Base excision repair
G3257_13650 (ligA)
03420 Nucleotide excision repair
G3257_13650 (ligA)
03430 Mismatch repair
G3257_13650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jlv03032
]
G3257_13650 (ligA)
03400 DNA repair and recombination proteins [BR:
jlv03400
]
G3257_13650 (ligA)
Enzymes [BR:
jlv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3257_13650 (ligA)
DNA replication proteins [BR:
jlv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3257_13650 (ligA)
DNA repair and recombination proteins [BR:
jlv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3257_13650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3257_13650 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3257_13650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3257_13650 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Bep_C_terminal
Usp
Motif
Other DBs
NCBI-ProteinID:
QKY03189
LinkDB
All DBs
Position
3029323..3031689
Genome browser
AA seq
788 aa
AA seq
DB search
MTDPINQDTAARNAAQRVLALTAELNRHLHAYHVLDNPTIPDAEYDKLFVELQALEAAHP
ELRTPDSPTLRVGAAPLPQFEQVTHTVPMLSLNNGFSDDDIVHFDRRVREGLDLDGAEVD
YAAEVKFDGLAINLRYENGLFVQAATRGDGATGEDVTANIRTISGIPLRLHGDKIPAVLD
VRGEVMMFKADFARLNERQREAGQKEFANPRNAAAGSLRQLDSRITAQRKLRFYAYGIGA
LDGAAMPVSHSALLDWYETLGIPVSKERKVVQGAQGLLAYYADIGARRPVLPYEIDGVVY
KVNATEDQQELGFVSRAPRFALAHKFPAEEALTQVLDIDIQVGRTGAMTPVARLAPVSVG
GVTVTNATLHNEDEVLRKDVRVGDTVIVRRAGDVIPEVLSVVLEKRPEPAPPPFKMRETC
PVCGSHVVREEGEAIARCSGGLFCSAQRKEAFRHFAGRRMMDIEGLGERYIDTLVELEYV
HGLADLYSLTLDKLLEMKVRADERDGSTPETVQQGKIPTKWAENLLAGIEASKRPPLERF
LFALGIRHVGESTAKTLAEWLGSLAYVRKAPAALLRVLPDIGGTVAESIADFFAEEKNQQ
ALQALLDAGVTPQGEHAPSAKLRTQLEQTTLLAAIGIPKLTEPRSKQLVERGVTLASLAA
QGASFHAGLPAAVAESLAQWLADEDNVKLLAQLDALRNELLSQLPEMPAAGGKLDGKTFV
LTGTLPNMSRDEAAELIEAAGGKVSGSVSKKTGYVVAGSDAGSKLAKAQELGVAILDEAG
LLALLAQD
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgactgatccgatcaaccaggacaccgcagcgcggaatgccgctcagcgcgtcctggca
ctcacggccgaactcaatcggcatctgcacgcctaccacgtgctcgacaatcccaccatt
cccgacgccgaatacgacaagctgtttgtcgaactgcaagcgctggaagcggcccatccc
gaactgcgcacgcccgattcgcccaccttgcgcgtgggcgcggcgcccttgccgcaattt
gagcaagtcacgcacacggtgccgatgctgtcgctgaataatggtttctccgatgacgat
atcgtccatttcgaccgccgcgtgcgcgaaggcctggaccttgacggtgcagaggtcgac
tacgcggccgaagtgaaattcgacggcctggccatcaacctgcgctatgaaaacggcctg
ttcgtgcaggcggccacgcgcggcgacggcgccacgggcgaagacgtgacggcgaatatc
cgcaccatttccggcatcccgctgcgcctgcatggcgacaagattcctgccgtgctcgac
gtgcgcggcgaagtgatgatgttcaaggccgattttgcccgtttgaacgaacgccagcgc
gaagcggggcagaaggaattcgccaatccccgcaacgcggccgccggcagcctgcgccag
ctcgattcgcgcatcacggcgcagcgcaagctgcgtttctatgcgtatggcatcggcgcc
ctcgatggtgccgccatgccggtgtcgcattcggccttgctggactggtacgaaacgctg
ggcatccccgtgtcgaaggagcgcaaggtagtgcagggcgcgcagggcttgctggcatat
tacgccgatatcggcgcgcgccggcccgtcttgccctacgaaatcgacggcgtggtctac
aaggtgaatgcgacggaagaccagcaggaactgggctttgtgtcgcgcgcaccccgtttt
gcgctggcgcacaagttccccgccgaagaggcactgacgcaggtgctggatatcgatatc
caggtgggccgcacgggcgccatgacgcccgtggcgcgcctggcgcccgtgtccgtgggt
ggcgtgacggtgaccaacgccaccttgcacaatgaagatgaagtgctgcgcaaggatgtg
cgcgtgggcgacaccgtcatcgtgcgccgcgctggcgacgtgattcccgaagtgctgagc
gtggtgctggaaaaacgcccggaaccggcaccgccgccgttcaagatgcgggaaacgtgc
cccgtctgtggctcgcacgtggtgcgcgaagagggcgaggcgattgcccgctgctcgggt
ggcctgttctgctcggcgcagcgcaaggaagcgttccgccattttgcgggccgccgcatg
atggatatcgaaggcctgggcgaacgttatatcgataccctggtcgaactggaatacgtg
catggcttggccgacctgtacagcctgaccctggataaactgctggaaatgaaagtgcgc
gccgacgagcgcgacggttcgacgcctgaaacagtgcaacaaggcaagattcctaccaag
tgggcggaaaatctgctggccggcatcgaggcgagcaagcgcccgccgcttgaacggttc
ctgttcgcgctgggcatccgccacgtgggcgaatcgacggccaagaccctggccgaatgg
ctgggcagcttggcgtatgtacgcaaagcgccggcggccttgctgcgcgtgctgcccgat
atcggcggtacggtggccgaatcgatcgccgacttctttgcggaagaaaagaatcagcag
gcgctgcaggcattgctggatgcgggtgtcacgccccagggcgaacacgcgcccagcgcc
aagctgcgcacgcagctcgaacaaactaccttgctggccgccatcggcatcccgaagctg
acggagccgcgcagcaagcagttggtggagcggggcgtgaccctggccagcctggctgcg
caaggcgccagcttccacgcgggcttgcccgccgccgtggccgaatcgctggcgcaatgg
ctggccgatgaggacaatgtcaagctgcttgctcaactggacgccctgcgaaatgaatta
ctgtcacaattgcctgaaatgccagccgctggcggcaaactggacggcaagactttcgtc
ctgacgggcaccttgcccaacatgagccgcgacgaagccgcggagctgatcgaggcggcc
ggtggcaaggtcagcggttctgtatcgaagaagacaggctatgtcgtggccggttcggat
gccggcagcaagctggccaaggcccaggagctgggtgtggccatactcgacgaggctggc
ttgctggctctgctggcgcaggactaa
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